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Report for CCDS53858.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
53858.1 |
Public |
Homo sapiens |
13 |
ATP12A |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:479](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:53858.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:479](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 13 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Provisional (this record has not been manually reviewed by the collaboration) Sequence IDs included in CCDS 53858.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000218548.10 |
ENSP00000218548.6 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000218548.10](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000218548.6](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000218548](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000218548](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001185085.2 |
NP_001172014.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001185085.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001172014.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001185085](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001172014](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001172014.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001172014.1 |
1045 |
P54707-2 |
1045 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 53858.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3138 nt): ATGCACCAGAAAACCCCAGAAATTTACTCCGTGGAGCTCAGCGGAACTAAGGACATCGTGAAAACAGACA AGGGGGATGGCAAGGAGAAGTATAGGGGTCTGAAGAACAACTGCCTGGAACTCAAAAAGAAAAATCACAA AGAGGAGTTTCAGAAAGAACTCCATCTGGATGACCACAAACTCAGCAATAGGGAATTGGAAGAGAAATAT GGCACAGACATCATTATGGGTCTCTCCAGCACCAGAGCTGCCGAGCTCCTGGCCCGGGATGGGCCCAACT CCCTCACCCCTCCCAAGCAGACGCCTGAGATCGTCAAGTTCCTCAAGCAGATGGTGGGGGGGTTCTCTAT CCTCCTGTGGGTGGGCGCCTTTCTCTGTTGGATTGCATATGGGATTCAGTACTCCAGCGACAAGTCTGCA TCCCTGAACAACGTGTACTTGGGCTGTGTGCTTGGTCTGGTGGTCATTTTAACGGGGATCTTTGCTTATT ACCAAGAGGCAAAAAGCACCAACATCATGTCCAGCTTCAATAAGATGATCCCTCAGCAAGCTCTCGTCAT CCGAGATTCCGAGAAGAAGACCATCCCTTCAGAGCAGCTGGTGGTGGGGGACATTGTGGAGGTCAAAGGA GGAGACCAGATCCCTGCAGACATCAGGGTGCTGTCTTCTCAGGGGTGTCGGGTGGATAACTCATCTCTCA CGGGGGAGTCTGAGCCCCAGCCCCGCTCCTCTGAGTTTACCCATGAAAACCCCCTGGAAACAAAGAACAT CTGCTTCTATTCCACAACGTGTCTGGAAGCATCTACTTCCCCTGTAGGCACTGTCACCGGCATGGTTATC AACACGGGTGACCGCACCATCATTGGCCATATTGCCTCATTGGCCTCAGGAGTTGGAAATGAGAAGACGC CCATTGCCATTGAGATCGAGCACTTTGTTCACATTGTGGCAGGAGTGGCTGTCTCCATCGGCATCCTTTT CTTCATCATCGCTGTGTCCCTGAAGTATCAAGTCCTGGACTCCATCATCTTCCTCATTGGCATCATTGTG GCCAATGTGCCCGAGGGCCTCCTGGCCACTGTCACTGTGACCCTGTCGCTGACAGCAAAACGGATGGCCA AGAAGAACTGCCTGGTGAAGAACCTGGAGGCTGTGGAGACCCTCGGCTCCACCTCCATCATCTGCTCGGA CAAGACTGGGACACTGACCCAGAACAGGATGACAGTGGCCCATCTGTGGTTCGACAATCAGATCTTTGTG GCTGACACCAGTGAGGACCATTCAAACCAAGTCTTTGACCAAAGCTCTAGGACTTGGGCCTCCTTATCCA AGATAATAACATTGTGTAACCGAGCAGAGTTCAAGCCAGGACAGGAAAATGTCCCCATCATGAAGAAAGC TGTGATTGGAGATGCCTCAGAAACTGCTCTTTTAAAATTCTCAGAGGTCATTTTGGGTGATGTGATGGAA ATTAGAAAAAGAAACCGCAAAGTAGCTGAAATCCCTTTTAACTCTACTAATAAATTTCAGCTCTCCATCC ACGAGATGGATGACCCCCACGGCAAGCGCTTCCTCATGGTGATGAAGGGGGCCCCTGAGCGCATCCTAGA GAAATGCAGCACCATCATGATCAACGGCGAGGAGCACCCACTGGACAAGAGCACTGCCAAGACCTTCCAC ACAGCCTACATGGAGCTGGGCGGGTTGGGCGAGCGTGTGCTGGGTTTCTGTCATCTCTACCTGCCAGCAG ACGAGTTTCCAGAAACCTACTCATTTGACATAGACGCTATGAACTTTCCGACCTCCAACCTCTGTTTTGT GGGACTCTTGTCAATGATCGATCCCCCTCGGTCCACCGTGCCAGATGCAGTCACCAAATGCCGGAGTGCA GGGATCAAGGTTATTATGGTTACTGGTGATCATCCCATCACAGCCAAAGCTATTGCCAAGAGTGTGGGGA TCATTTCAGCCAACAGTGAAACAGTGGAAGACATTGCACATCGCCTCAACATTGCTGTGGAGCAAGTTAA CAAACGGGATGCCAAGGCCGCTGTGGTGACTGGCATGGAGCTGAAGGACATGAGCTCAGAACAGCTGGAT GAGATCTTAGCCAACTACCAGGAGATTGTCTTTGCCCGGACATCCCCCCAGCAGAAGCTGATCATTGTGG AGGGCTGTCAGAGGCAGGATGCTGTTGTTGCTGTGACCGGGGATGGAGTTAATGACTCTCCGGCTCTAAA GAAGGCAGACATTGGGATTGCCATGGGGATAGCAGGTTCTGATGCAGCCAAAAATGCAGCCGACATGGTC TTGCTGGACGACAACTTCGCATCCATCGTCACAGGGGTGGAGGAAGGTCGCCTGATCTTTGACAACCTCA AGAAGACTATTGCTTATTCCCTGACCAAGAACATTGCCGAGCTGTGCCCCTTTCTGATCTACATCATTGT CGGGCTCCCCCTGCCCATTGGCACCATCACCATTCTGTTCATTGACTTGGGGACAGACATTATCCCCTCC ATTGCCTTGGCGTACGAGAAAGCTGAAAGTGACATCATGAACAGGAAGCCTCGCCACAAGAATAAGGACA GGCTGGTGAACCAGCCGCTCGCTGTGTACTCATACCTGCACATTGGCCTCATGCAAGCCCTGGGAGCTTT CCTTGTGTATTTCACCGTCTATGCACAAGAGGGCTTTCTGCCCCGCACTCTCATTAACCTGCGGGTAGAA TGGGAGAAGGACTACGTGAATGACTTGAAAGACAGCTATGGGCAGGAATGGACAAGGTACCAGAGGGAAT ACCTAGAATGGACGGGCTACACGGCTTTCTTTGTTGGCATCCTAGTCCAGCAAATAGCAGATCTGATCAT CAGGAAAACCCGGAGGAATTCCATCTTCCAGCAGGGTCTCTTCAGAAATAAAGTCATCTGGGTGGGGATC ACCTCACAGATCATCATTGGTCTGATCCTCTCCTATGGCCTCGGAAGTGTCACAGCCTTGAGTTTCACCA TGCTTAGGGCTCAGTACTGGTTTGTGGCTGTGCCGCACGCCATCCTGATCTGGGTGTATGATGAGGTGCG GAAGCTCTTCATCAGGCTCTACCCTGGAAGCTGGTGGGATAAGAACATGTATTATTAA
Translation (1045 aa): MHQKTPEIYSVELSGTKDIVKTDKGDGKEKYRGLKNNCLELKKKNHKEEFQKELHLDDHKLSNRELEEKY GTDIIMGLSSTRAAELLARDGPNSLTPPKQTPEIVKFLKQMVGGFSILLWVGAFLCWIAYGIQYSSDKSA SLNNVYLGCVLGLVVILTGIFAYYQEAKSTNIMSSFNKMIPQQALVIRDSEKKTIPSEQLVVGDIVEVKG GDQIPADIRVLSSQGCRVDNSSLTGESEPQPRSSEFTHENPLETKNICFYSTTCLEASTSPVGTVTGMVI NTGDRTIIGHIASLASGVGNEKTPIAIEIEHFVHIVAGVAVSIGILFFIIAVSLKYQVLDSIIFLIGIIV ANVPEGLLATVTVTLSLTAKRMAKKNCLVKNLEAVETLGSTSIICSDKTGTLTQNRMTVAHLWFDNQIFV ADTSEDHSNQVFDQSSRTWASLSKIITLCNRAEFKPGQENVPIMKKAVIGDASETALLKFSEVILGDVME IRKRNRKVAEIPFNSTNKFQLSIHEMDDPHGKRFLMVMKGAPERILEKCSTIMINGEEHPLDKSTAKTFH TAYMELGGLGERVLGFCHLYLPADEFPETYSFDIDAMNFPTSNLCFVGLLSMIDPPRSTVPDAVTKCRSA GIKVIMVTGDHPITAKAIAKSVGIISANSETVEDIAHRLNIAVEQVNKRDAKAAVVTGMELKDMSSEQLD EILANYQEIVFARTSPQQKLIIVEGCQRQDAVVAVTGDGVNDSPALKKADIGIAMGIAGSDAAKNAADMV LLDDNFASIVTGVEEGRLIFDNLKKTIAYSLTKNIAELCPFLIYIIVGLPLPIGTITILFIDLGTDIIPS IALAYEKAESDIMNRKPRHKNKDRLVNQPLAVYSYLHIGLMQALGAFLVYFTVYAQEGFLPRTLINLRVE WEKDYVNDLKDSYGQEWTRYQREYLEWTGYTAFFVGILVQQIADLIIRKTRRNSIFQQGLFRNKVIWVGI TSQIIIGLILSYGLGSVTALSFTMLRAQYWFVAVPHAILIWVYDEVRKLFIRLYPGSWWDKNMYY
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