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Report for CCDS53720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53720.1 Public Homo sapiens 11 GRAMD1B 24 110 108 CCDS HistoryNCBI Gene:57476Re-query CCDS DB by CCDS ID:53720.1Re-query CCDS DB by GeneID:57476See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53720.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000529750.5 ENSP00000436500.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529750.5Link to Ensembl Protein Viewer:ENSP00000436500.1Re-query CCDS DB by Nucleotide ID:ENST00000529750Re-query CCDS DB by Protein ID:ENSP00000436500
Original member Current member NCBI NM_020716.4 NP_065767.1 Accepted alive Link to Nucleotide Sequence:NM_020716.4Link to Protein Sequence:NP_065767.1Re-query CCDS DB by Nucleotide ID:NM_020716Re-query CCDS DB by Protein ID:NP_065767Link to BLAST:NP_065767.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065767.1 738 Q3KR37-1 738 100% 0 0

Chromosomal Locations for CCDS 53720.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 123526149 123526171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123577367 123577577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123584312 123584332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123594082 123594166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123594735 123594838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123595942 123596037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123600468 123600548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123603426 123603541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123605322 123605478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123606609 123606798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123608659 123608802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123609795 123609913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123610196 123610338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123612761 123612864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123613455 123613658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123614745 123614835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123618345 123618356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123618693 123618800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123619107 123619224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 123622506 123622595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2217 nt):
ATGAAAGGATTCAAGCTCTCCTGCACTGCCAGTAACTCCAACCGCAGCACGCCGGCCTGCTCGCCCATCC
TCCGGAAGCGGTCTCGCTCGCCAACCCCGCAGAACCAGGACGGAGACACCATGGTGGAGAAGGGCTCAGA
TCACTCCTCGGACAAGTCCCCGTCCACACCGGAGCAGGGCGTGCAGCGCAGCTGCTCCTCCCAGTCCGGC
CGGAGCGGCGGCAAGAATTCCAAGAAAAGCCAGAGTTGGTATAATGTGTTAAGCCCCACCTACAAGCAGA
GAAATGAAGACTTCAGAAAGCTCTTTAAGCAGCTTCCAGACACGGAGCGCCTCATTGTTGATTACTCATG
TGCACTCCAAAGAGACATTCTCCTTCAGGGCCGACTCTACCTCTCTGAAAATTGGATCTGCTTCTACAGC
AACATCTTCCGCTGGGAAACTCTGCTGACAGTCCGTTTGAAAGACATCTGTTCCATGACTAAAGAAAAAA
CAGCTCGCCTCATTCCCAATGCCATCCAAGTTTGCACTGATTCAGAAAAGCACTTCTTCACTTCGTTTGG
GGCCCGGGATAGGACATATATGATGATGTTCCGGCTCTGGCAGAATGCTCTCCTTGAAAAGCCTCTGTGT
CCCAAGGAGCTCTGGCACTTTGTTCACCAGTGCTATGGGAACGAATTGGGCCTGACCAGTGATGACGAGG
ACTACGTGCCCCCTGACGACGACTTCAACACAATGGGATACTGTGAAGAGATCCCTGTGGAAGAGAATGA
AGTGAATGACAGCTCATCCAAGAGCAGCATAGAGACCAAGCCAGATGCCAGTCCACAGCTGCCCAAGAAA
TCCATCACCAACAGCACACTAACATCCACAGGGAGCAGTGAGGCCCCCGTCTCGTTTGATGGGCTGCCCC
TGGAGGAAGAGGCGCTGGAGGGAGACGGGTCCCTGGAAAAGGAGCTCGCCATTGACAACATCATGGGGGA
GAAGATTGAGATGATCGCTCCTGTGAACTCCCCTTCACTGGACTTCAATGACAATGAGGACATCCCCACT
GAGCTCAGTGACTCTTCCGACACACACGATGAAGGAGAGGTCCAGGCCTTCTATGAGGACCTGAGTGGCC
GGCAGTACGTGAATGAAGTCTTCAACTTCAGCGTGGACAAGCTCTATGACCTCCTCTTCACCAACTCGCC
CTTCCAGCGGGATTTCATGGAGCAGCGGCGCTTCTCTGATATCATCTTCCATCCATGGAAAAAGGAGGAG
AATGGAAACCAGAGCCGAGTGATTCTTTACACCATCACCCTTACCAACCCTCTGGCTCCCAAAACTGCCA
CTGTCAGGGAGACACAGACCATGTACAAGGCGAGCCAGGAGAGTGAATGTTACGTGATAGATGCCGAAGT
CCTCACCCACGACGTGCCCTACCATGACTACTTCTACACAATCAATCGCTACACGCTCACCCGTGTGGCT
CGGAACAAGAGCCGACTCAGGGTCTCCACAGAGCTGCGCTATCGAAAACAGCCCTGGGGGTTAGTGAAAA
CGTTCATCGAGAAGAACTTCTGGAGTGGGCTGGAGGACTACTTCCGCCATTTAGAGAGCGAGCTGGCCAA
AACGGAGAGCACTTATTTGGCTGAGATGCACAGACAATCTCCCAAAGAGAAGGCCAGCAAGACTACAACG
GTGCGGAGGAGGAAGCGTCCCCATGCCCACCTGCGAGTCCCTCACCTGGAAGAGGTGATGAGCCCGGTCA
CCACGCCCACAGATGAGGATGTGGGCCACAGGATCAAACATGTGGCAGGTTCCACACAGACGCGGCATAT
CCCGGAGGACACCCCCAACGGTTTCCACCTGCAGAGCGTGTCCAAGCTGCTGCTGGTTATCAGCTGTGTG
ATCTGTTTCAGTCTGGTGCTGCTGGTCATCCTTAACATGATGCTCTTCTACAAACTCTGGATGTTGGAAT
ACACCACGCAGACCCTCACTGCCTGGCAGGGTCTAAGGCTCCAAGAAAGGTTACCCCAGTCTCAGACAGA
ATGGGCCCAGCTCTTAGAGTCCCAACAAAAGTACCACGATACTGAGCTCCAAAAATGGAGGGAAATCATC
AAATCCTCAGTGATGCTCCTTGACCAGATGAAGGACTCGCTCATCAACCTTCAGAACGGCATCAGGTCCC
GCGACTACACGTCGGAAAGTGAAGAAAAGAGGAATCGCTATCATTGA

Translation (738 aa):
MKGFKLSCTASNSNRSTPACSPILRKRSRSPTPQNQDGDTMVEKGSDHSSDKSPSTPEQGVQRSCSSQSG
RSGGKNSKKSQSWYNVLSPTYKQRNEDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYS
NIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKPLC
PKELWHFVHQCYGNELGLTSDDEDYVPPDDDFNTMGYCEEIPVEENEVNDSSSKSSIETKPDASPQLPKK
SITNSTLTSTGSSEAPVSFDGLPLEEEALEGDGSLEKELAIDNIMGEKIEMIAPVNSPSLDFNDNEDIPT
ELSDSSDTHDEGEVQAFYEDLSGRQYVNEVFNFSVDKLYDLLFTNSPFQRDFMEQRRFSDIIFHPWKKEE
NGNQSRVILYTITLTNPLAPKTATVRETQTMYKASQESECYVIDAEVLTHDVPYHDYFYTINRYTLTRVA
RNKSRLRVSTELRYRKQPWGLVKTFIEKNFWSGLEDYFRHLESELAKTESTYLAEMHRQSPKEKASKTTT
VRRRKRPHAHLRVPHLEEVMSPVTTPTDEDVGHRIKHVAGSTQTRHIPEDTPNGFHLQSVSKLLLVISCV
ICFSLVLLVILNMMLFYKLWMLEYTTQTLTAWQGLRLQERLPQSQTEWAQLLESQQKYHDTELQKWREII
KSSVMLLDQMKDSLINLQNGIRSRDYTSESEEKRNRYH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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