NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS53647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53647.1 Public Homo sapiens 11 PLAAT5 24 110 108 CCDS HistoryNCBI Gene:117245Re-query CCDS DB by CCDS ID:53647.1Re-query CCDS DB by GeneID:117245See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53647.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000539221.5 ENSP00000443873.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539221.5Link to Ensembl Protein Viewer:ENSP00000443873.1Re-query CCDS DB by Nucleotide ID:ENST00000539221Re-query CCDS DB by Protein ID:ENSP00000443873
Original member Current member NCBI NM_001146728.2 NP_001140200.2 Accepted alive Link to Nucleotide Sequence:NM_001146728.2Link to Protein Sequence:NP_001140200.2Re-query CCDS DB by Nucleotide ID:NM_001146728Re-query CCDS DB by Protein ID:NP_001140200Link to BLAST:NP_001140200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001140200.2 253 Q96KN8-2 253 100% 0 0

Chromosomal Locations for CCDS 53647.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63463531 63463595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63466160 63466372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63468357 63468465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63488871 63488976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63490243 63490363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63490887 63491034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGGGCCTGAGCCCGGGCGCCGAGGGGGAGTACGCGCTCCGCCTCCCTAGGATTCCCCCACCCCTCCCCA
AACCCGCCTCGCGAACCGCCAGTACCGGGCCCAAGGACCAGCCGCCTGCGCTCAGACGTTCAGCTGTGCC
CCACTCAGGTCTAAATAGCATTTCCCCCCTTGAATTAGAAGAATCCGTGGGATTCGCAGCGTTGGTCCAG
CTCCCAGCCAAGCAGCCTCCGCCGGGCACATTAGAACAGGGCAGAAGCATCCAGCAAGGGGAGAAGGCTG
TAGTTAGCTTGGAGACCACACCCAGCCAGAAAGCAGACTGGAGTTCAATTCCAAAGCCTGAGAATGAAGG
CAAGTTAATAAAGCAAGCAGCTGAGGGAAAACCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGA
ATTGGCTATGAGCACTGGGCCATCTATGTAGAAGATGATTGCGTGGTCCATCTGGCTCCCCCAAGTGAGG
AGTTTGAGGTGGGCAGCATTACTTCCATCTTTAGCAATCGGGCCGTGGTGAAATACAGTCGTCTGGAGGA
TGTGCTGCATGGCTGCTCCTGGAAGGTCAATAACAAGCTAGATGGGACGTACCTGCCCTTGCCGGTGGAC
AAGATCATCCAGCGTACAAAAAAGATGGTCAACAAGATCGTGCAGTACAGCCTGATTGAAGGGAACTGTA
GAGCACGCCCTGATGGAAGGAGCGAAGGCTGCTGGAGCAGTTATTTCAGCTGTAGTGGATAG

Translation (253 aa):
MGLSPGAEGEYALRLPRIPPPLPKPASRTASTGPKDQPPALRRSAVPHSGLNSISPLELEESVGFAALVQ
LPAKQPPPGTLEQGRSIQQGEKAVVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFR
IGYEHWAIYVEDDCVVHLAPPSEEFEVGSITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVD
KIIQRTKKMVNKIVQYSLIEGNCRARPDGRSEGCWSSYFSCSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH