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Report for CCDS53646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53646.1 Public Homo sapiens 11 PLAAT5 24 110 108 CCDS HistoryNCBI Gene:117245Re-query CCDS DB by CCDS ID:53646.1Re-query CCDS DB by GeneID:117245See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53646.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000540857.6 ENSP00000444809.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000540857.6Link to Ensembl Protein Viewer:ENSP00000444809.1Re-query CCDS DB by Nucleotide ID:ENST00000540857Re-query CCDS DB by Protein ID:ENSP00000444809
Original member Current member NCBI NM_001146729.2 NP_001140201.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001146729.2Link to Protein Sequence:NP_001140201.2Re-query CCDS DB by Nucleotide ID:NM_001146729Re-query CCDS DB by Protein ID:NP_001140201Link to BLAST:NP_001140201.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001140201.2 269 Q96KN8-3 269 100% 0 0

Chromosomal Locations for CCDS 53646.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 63463503 63463595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63466110 63466372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63468357 63468465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63488871 63488976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63490243 63490333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 63490887 63491034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGGCCTGAGCCCGGGCGCCGAGGGGGAGTACGCGCTCCGCCTCCCTAGGATTCCCCCACCCCTCCCCA
AACCCGCCTCGCGAACCGCCAGTACCGGGCCCAAGGACCAGCCGCCTGCGCTCAGACGTTCAGCTGTGCC
CCACTCAGAAGAATCCGTGGGATTCGCAGCGTTGGTCCAGCTCCCAGCCAAGCAGCCTCCGCCGGGCACA
TTAGAACAGGGCAGAAGCATCCAGCAAGGGGAGAAGGCTGTAGTTAGCTTGGAGACCACACCCAGCCAGA
AAGCAGACTGGAGTTCAATTCCAAAGCCTGAGAATGAAGGCAAGTTAATAAAGCAAGCAGCTGAGGGAAA
ACCAAGACCCAGACCTGGAGACCTGATTGAGATTTTTCGAATTGGCTATGAGCACTGGGCCATCTATGTA
GAAGATGATTGCGTGGTCCATCTGGCTCCCCCAAGTGAGGAGTTTGAGGTGGGCAGCATTACTTCCATCT
TTAGCAATCGGGCCGTGGTGAAATACAGTCGTCTGGAGGATGTGCTGCATGGCTGCTCCTGGAAGGTCAA
TAACAAGCTAGATGGGACGTACCTGCCCTTGCCGGTGGACAAGATCATCCAGCGTACAAAAAAGATGGTC
AACAAGATCGTGCAGTACAGCCTGATTGAAGGGAACTGTGAGCACTTTGTCAATGGCCTCAGATATGGCG
TACCCCGGAGCCAGCAGGTAGAGCACGCCCTGATGGAAGGAGCGAAGGCTGCTGGAGCAGTTATTTCAGC
TGTAGTGGATAGCATAAAGCCCAAACCAATAACTGCCTGA

Translation (269 aa):
MGLSPGAEGEYALRLPRIPPPLPKPASRTASTGPKDQPPALRRSAVPHSEESVGFAALVQLPAKQPPPGT
LEQGRSIQQGEKAVVSLETTPSQKADWSSIPKPENEGKLIKQAAEGKPRPRPGDLIEIFRIGYEHWAIYV
EDDCVVHLAPPSEEFEVGSITSIFSNRAVVKYSRLEDVLHGCSWKVNNKLDGTYLPLPVDKIIQRTKKMV
NKIVQYSLIEGNCEHFVNGLRYGVPRSQQVEHALMEGAKAAGAVISAVVDSIKPKPITA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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