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Report for CCDS53620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53620.1 Public Homo sapiens 11 CREB3L1 24 110 108 CCDS HistoryNCBI Gene:90993Re-query CCDS DB by CCDS ID:53620.1Re-query CCDS DB by GeneID:90993See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53620.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621158.5 ENSP00000481956.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621158.5Link to Ensembl Protein Viewer:ENSP00000481956.1Re-query CCDS DB by Nucleotide ID:ENST00000621158Re-query CCDS DB by Protein ID:ENSP00000481956
Original member Current member NCBI NM_052854.4 NP_443086.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052854.4Link to Protein Sequence:NP_443086.1Re-query CCDS DB by Nucleotide ID:NM_052854Re-query CCDS DB by Protein ID:NP_443086Link to BLAST:NP_443086.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443086.1 519 Q96BA8-1 519 100% 0 0

Chromosomal Locations for CCDS 53620.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46278112 46278213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46299935 46300163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46307816 46308000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46309989 46310067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46311032 46311189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46312325 46312474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46312612 46312670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46312851 46312919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46316286 46316385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46317361 46317487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46320264 46320528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46320710 46320746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGACGCCGTCTTGGAACCCTTCCCGGCCGACAGGCTGTTCCCCGGATCCAGCTTCCTGGACTTGGGGG
ATCTGAACGAGTCGGACTTCCTCAACAATGCGCACTTTCCTGAGCACCTGGACCACTTTACGGAGAACAT
GGAGGACTTCTCCAATGACCTGTTCAGCAGCTTCTTTGATGACCCTGTGCTGGATGAGAAGAGCCCTCTA
TTGGACATGGAACTGGACTCCCCTACGCCAGGCATCCAGGCGGAGCACAGCTACTCCCTGAGCGGCGACT
CAGCGCCCCAGAGCCCCCTTGTGCCCATCAAGATGGAGGACACCACCCAAGATGCAGAGCATGGAGCATG
GGCGCTGGGACACAAACTGTGCTCCATCATGGTGAAGCAGGAGCAGAGCCCGGAGCTGCCCGTGGACCCT
CTGGCTGCCCCCTCGGCCATGGCTGCCGCGGCCGCCATGGCCACCACCCCGCTGCTGGGCCTCAGCCCCT
TGTCCAGGCTGCCCATCCCCCACCAGGCCCCGGGAGAGATGACTCAGCTGCCAGTGATCAAAGCAGAGCC
TCTGGAGGTGAACCAGTTCCTCAAAGTGACACCGGAGGACCTGGTGCAGATGCCTCCGACGCCCCCCAGC
AGCCATGGCAGTGACAGCGACGGCTCCCAGAGTCCCCGCTCTCTGCCCCCCTCCAGCCCTGTCAGGCCCA
TGGCGCGCTCCTCCACGGCCATCTCCACCTCCCCACTCCTCACTGCCCCTCACAAATTACAGGGGACATC
AGGGCCACTGCTCCTGACAGAGGAGGAGAAGCGGACCCTGATTGCTGAGGGCTACCCCATCCCCACAAAA
CTCCCCCTCACCAAAGCCGAGGAGAAGGCCTTGAAGAGAGTCCGGAGGAAAATCAAGAACAAGATCTCAG
CCCAGGAGAGCCGTCGTAAGAAGAAGGAGTATGTGGAGTGTCTAGAAAAGAAGGTGGAGACATTTACATC
TGAGAACAATGAACTGTGGAAGAAGGTGGAGACCCTGGAGAATGCCAACAGGACCCTGCTCCAGCAGCTG
CAGAAACTCCAGACTCTGGTCACCAACAAGATCTCCAGACCTTACAAGATGGCCGCCACCCAGACTGGGA
CCTGCCTCATGGTGGCAGCCTTGTGCTTTGTTCTGGTGCTGGGCTCCCTCGTGCCCTGCCTTCCCGAGTT
CTCCTCCGGCTCCCAGACTGTGAAGGAAGACCCCCTGGCCGCAGACGGCGTCTACACGGCCAGCCAGATG
CCCTCCCGAAGCCTCCTATTCTACGATGACGGGGCAGGCTTATGGGAAGATGGCCGCAGCACCCTGCTGC
CCATGGAGCCCCCAGATGGCTGGGAAATCAACCCCGGGGGGCCGGCAGAGCAGCGGCCCCGGGACCACCT
GCAGCATGATCACCTGGACAGCACCCACGAGACCACCAAGTACCTGAGTGAGGCCTGGCCTAAAGACGGT
GGAAACGGCACCAGCCCCGACTTCTCCCACTCCAAGGAGTGGTTCCACGACAGGGATCTGGGCCCCAACA
CCACCATCAAACTCTCCTAG

Translation (519 aa):
MDAVLEPFPADRLFPGSSFLDLGDLNESDFLNNAHFPEHLDHFTENMEDFSNDLFSSFFDDPVLDEKSPL
LDMELDSPTPGIQAEHSYSLSGDSAPQSPLVPIKMEDTTQDAEHGAWALGHKLCSIMVKQEQSPELPVDP
LAAPSAMAAAAAMATTPLLGLSPLSRLPIPHQAPGEMTQLPVIKAEPLEVNQFLKVTPEDLVQMPPTPPS
SHGSDSDGSQSPRSLPPSSPVRPMARSSTAISTSPLLTAPHKLQGTSGPLLLTEEEKRTLIAEGYPIPTK
LPLTKAEEKALKRVRRKIKNKISAQESRRKKKEYVECLEKKVETFTSENNELWKKVETLENANRTLLQQL
QKLQTLVTNKISRPYKMAATQTGTCLMVAALCFVLVLGSLVPCLPEFSSGSQTVKEDPLAADGVYTASQM
PSRSLLFYDDGAGLWEDGRSTLLPMEPPDGWEINPGGPAEQRPRDHLQHDHLDSTHETTKYLSEAWPKDG
GNGTSPDFSHSKEWFHDRDLGPNTTIKLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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