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Report for CCDS53440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53440.1 Public Homo sapiens 1 MR1 24 110 108 CCDS HistoryNCBI Gene:3140Re-query CCDS DB by CCDS ID:53440.1Re-query CCDS DB by GeneID:3140See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53440.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282990.10 ENSP00000282990.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000282990.10Link to Ensembl Protein Viewer:ENSP00000282990.6Re-query CCDS DB by Nucleotide ID:ENST00000282990Re-query CCDS DB by Protein ID:ENSP00000282990
Original member Current member NCBI NM_001195000.2 NP_001181929.1 Accepted alive Link to Nucleotide Sequence:NM_001195000.2Link to Protein Sequence:NP_001181929.1Re-query CCDS DB by Nucleotide ID:NM_001195000Re-query CCDS DB by Protein ID:NP_001181929Link to BLAST:NP_001181929.1
Original member Current member NCBI NM_001385164.1 NP_001372093.1 Accepted alive Link to Nucleotide Sequence:NM_001385164.1Link to Protein Sequence:NP_001372093.1Re-query CCDS DB by Nucleotide ID:NM_001385164Re-query CCDS DB by Protein ID:NP_001372093Link to BLAST:NP_001372093.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001181929.1 249 Q95460-3 249 100% 0 0
NP_001372093.1 249 Q95460-3 249 100% 0 0

Chromosomal Locations for CCDS 53440.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 181034008 181034074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181049052 181049312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181050011 181050286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181053573 181053677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 181055225 181055265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (750 nt):
ATGGGGGAACTGATGGCGTTCCTGTTACCTCTCATCATTGTGTTAATGGTGAAGCACAGCGATTCCCGGA
CGCACTCTCTGAGATATTTTCGCCTGGGCGTTTCGGATCCCATCCATGGGGTCCCTGAATTTATTTCGGT
TGGGTACGTGGACTCGCACCCTATCACCACATATGACAGTGTCACTCGGCAGAAGGAGCCACGGGCCCCA
TGGATGGCAGAGAACCTCGCGCCTGATCACTGGGAGAGGTACACTCAGCTGCTGAGGGGCTGGCAGCAGA
TGTTCAAGGTGGAACTGAAGCGCCTACAGAGGCACTACAATCACTCAGGGTCTCACACTTACCAGAGAAT
GATTGGCTGTGAGCTGCTGGAGGATGGAAGCACCACAGGATTTCTGCAGTATGCATATGACGGGCAGGAT
TTCCTGATCTTCAATAAAGACACCCTCTCCTGGCTGGCTGTAGATAATGTGGCTCACACCATCAAGCAGG
CATGGGAGGCCAATCAGCATGAGTTGCTGTATCAAAAGAATTGGCTGGAAGAAGAATGTATTGCCTGGCT
AAAGAGATTCCTGGAGTATGGGAAAGACACCCTACAAAGAACAGAATCAGAAACTATCCCTCTTGTGATG
AAAGCTGTCTCTGGGTCCATTGTCCTTGTCATTGTGCTGGCTGGAGTTGGTGTTCTAGTCTGGAGAAGAA
GGCCCCGAGAGCAAAATGGAGCCATCTACCTTCCAACACCAGATCGATGA

Translation (249 aa):
MGELMAFLLPLIIVLMVKHSDSRTHSLRYFRLGVSDPIHGVPEFISVGYVDSHPITTYDSVTRQKEPRAP
WMAENLAPDHWERYTQLLRGWQQMFKVELKRLQRHYNHSGSHTYQRMIGCELLEDGSTTGFLQYAYDGQD
FLIFNKDTLSWLAVDNVAHTIKQAWEANQHELLYQKNWLEEECIAWLKRFLEYGKDTLQRTESETIPLVM
KAVSGSIVLVIVLAGVGVLVWRRRPREQNGAIYLPTPDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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