NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS5314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5314.1 Public Homo sapiens 6 FAM120B 24 110 108 CCDS HistoryNCBI Gene:84498Re-query CCDS DB by CCDS ID:5314.1Re-query CCDS DB by GeneID:84498See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5314.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000476287.4 ENSP00000417970.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000476287.4Link to Ensembl Protein Viewer:ENSP00000417970.1Re-query CCDS DB by Nucleotide ID:ENST00000476287Re-query CCDS DB by Protein ID:ENSP00000417970
Original member Current member NCBI NM_032448.3 NP_115824.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032448.3Link to Protein Sequence:NP_115824.1Re-query CCDS DB by Nucleotide ID:NM_032448Re-query CCDS DB by Protein ID:NP_115824Link to BLAST:NP_115824.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115824.1 910 Q96EK7-1 910 100% 0 0

Chromosomal Locations for CCDS 5314.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 170317391 170319124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170323079 170323259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170330449 170330550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170348151 170348323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170358226 170358318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170388287 170388493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170391013 170391121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170395487 170395579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 170404550 170404590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2733 nt):
ATGGGTGTGAGAGGTTTGCAAGGATTTGTGGGAAGTACCTGCCCACATATATGTACAGTAGTAAATTTCA
AAGAACTGGCAGAGCACCACCGAAGCAAGTATCCTGGATGTACCCCTACCATTGTGGTTGATGCCATGTG
TTGTCTCAGATATTGGTATACTCCAGAATCTTGGATCTGCGGTGGCCAGTGGCGAGAATACTTTTCTGCT
TTGCGAGATTTTGTTAAAACTTTTACGGCAGCTGGGATCAAGTTGATATTCTTCTTTGATGGCATGGTGG
AGCAGGATAAGAGAGATGAATGGGTGAAACGAAGGCTCAAGAACAACAGGGAGATATCCAGGATTTTTCA
TTACATCAAGTCACACAAGGAGCAGCCAGGCAGAAATATGTTCTTCATCCCCTCAGGGCTAGCTGTGTTT
ACACGATTTGCTCTAAAGACACTGGGCCAGGAAACTTTGTGTTCTTTGCAGGAAGCAGATTATGAGGTAG
CTTCCTATGGCCTCCAGCATAACTGTCTTGGGATTCTGGGGGAAGACACTGATTACCTAATCTATGACAC
TTGTCCCTACTTTTCAATTAGCGAGCTCTGCCTAGAGAGCCTGGACACCGTCATGCTCTGCAGAGAGAAG
CTCTGTGAGAGTCTGGGCCTCTGTGTGGCCGACCTTCCTCTTCTGGCCTGCCTCCTTGGCAACGACATAA
TCCCAGAGGGCATGTTTGAAAGCTTTAGGTACAAATGCTTATCGTCCTACACCTCTGTAAAAGAGAACTT
TGACAAAAAAGGTAACATCATATTAGCTGTGTCAGACCATATATCGAAAGTTCTTTACTTGTATCAAGGT
GAGAAAAAATTAGAAGAGATATTACCTCTGGGACCAAACAAAGCTCTTTTTTATAAAGGAATGGCATCAT
ATCTTTTACCAGGACAAAAATCTCCATGGTTTTTCCAAAAACCCAAAGGTGTAATAACTTTGGACAAACA
AGTAATATCCACGAGTTCAGACGCCGAATCCAGGGAAGAAGTTCCCATGTGTTCAGATGCTGAATCCAGG
CAAGAAGTTCCCATGTGTACAGGCCCTGAATCCAGGCGAGAAGTTCCCGTGTATACAGATTCTGAACCCA
GGCAAGAAGTTCCCATGTGTTCAGACCCTGAACCCAGGCAAGAAGTTCCCACGTGTACAGGCCCTGAATC
CAGGCGAGAAGTTCCCATGTGTTCAGACCCTGAACCCAGGCAAGAAGTTCCCATGTGTACAGGCCCTGAA
GCCAGGCAAGAAGTTCCCATGTATACAGACTCTGAACCCAGGCAAGAAGTTCCCATGTATACAGACTCTG
AACCCAGGCAAGAAGTTCCCATGTATACAGGCTCTGAACCCAGGCAAGAAGTTCCCATGTATACAGGCCC
TGAATCCAGGCAAGAAGTTCCCATGTATACAGGCCCTGAATCCAGGCAAGAAGTTTTAATACGGACAGAC
CCTGAATCTAGGCAAGAAATTATGTGTACAGGCCATGAATCCAAACAGGAAGTTCCCATATGTACAGATC
CTATATCCAAGCAAGAAGACTCCATGTGTACACACGCTGAAATCAATCAAAAATTACCTGTAGCAACAGA
TTTTGAATTTAAGCTAGAAGCTCTCATGTGTACAAACCCTGAAATTAAACAAGAAGACCCCACAAATGTG
GGGCCTGAAGTAAAGCAACAAGTAACCATGGTTTCAGACACTGAAATCTTAAAGGTTGCTAGAACACATC
ACGTCCAAGCAGAAAGCTACCTGGTGTACAACATCATGAGCAGTGGAGAGATTGAATGCAGCAACACCCT
AGAAGATGAGCTTGACCAGGCCTTACCCAGCCAGGCCTTCATTTACCGTCCCATTCGACAGCGGGTCTAC
TCACTCTTACTGGAGGACTGTCAAGATGTCACCAGCACCTGCCTAGCTGTCAAGGAGTGGTTTGTGTATC
CTGGGAACCCACTGAGGCACCCGGACCTCGTCAGGCCGCTGCAGATGACCATTCCAGGGGGAACGCCTAG
TTTGAAAATATTATGGCTGAACCAAGAGCCAGAAATACAGGTTCGGCGCTTGGACACACTCCTAGCCTGT
TTCAATCTTTCCTCCTCAAGAGAAGAGCTGCAGGCTGTCGAAAGCCCATTTCAAGCTTTGTGCTGCCTCT
TGATCTACCTCTTTGTCCAGGTGGACACGCTTTGCCTGGAGGATTTGCATGCGTTTATTGCGCAGGCCTT
GTGCCTCCAAGGAAAATCCACCTCGCAGCTTGTAAATCTACAGCCTGATTACATCAACCCCAGAGCCGTG
CAGCTGGGCTCCCTTCTCGTCCGCGGCCTCACCACTCTGGTTTTAGTCAACAGCGCATGTGGCTTCCCCT
GGAAGACGAGTGATTTCATGCCCTGGAATGTATTTGACGGGAAGCTTTTTCATCAGAAGTACTTGCAATC
TGAAAAGGGTTATGCTGTGGAGGTTCTTTTAGAACAAAATAGATCTCGGCTCACCAAATTCCACAACCTG
AAGGCAGTCGTCTGCAAGGCCTGCATGAAGGAGAACAGACGCATCACTGGCCGAGCCCACTGGGGCTCAC
ACCACGCAGGGAGGTGGGGAAGACAGGGCTCCAGCTACCACAGGACGGGCTCTGGGTATAGCCGTTCCAG
TCAGGGACAGCCGTGGAGAGACCAGGGACCAGGAAGCAGACAGTATGAGCATGACCAGTGGAGAAGGTAC
TAG

Translation (910 aa):
MGVRGLQGFVGSTCPHICTVVNFKELAEHHRSKYPGCTPTIVVDAMCCLRYWYTPESWICGGQWREYFSA
LRDFVKTFTAAGIKLIFFFDGMVEQDKRDEWVKRRLKNNREISRIFHYIKSHKEQPGRNMFFIPSGLAVF
TRFALKTLGQETLCSLQEADYEVASYGLQHNCLGILGEDTDYLIYDTCPYFSISELCLESLDTVMLCREK
LCESLGLCVADLPLLACLLGNDIIPEGMFESFRYKCLSSYTSVKENFDKKGNIILAVSDHISKVLYLYQG
EKKLEEILPLGPNKALFYKGMASYLLPGQKSPWFFQKPKGVITLDKQVISTSSDAESREEVPMCSDAESR
QEVPMCTGPESRREVPVYTDSEPRQEVPMCSDPEPRQEVPTCTGPESRREVPMCSDPEPRQEVPMCTGPE
ARQEVPMYTDSEPRQEVPMYTDSEPRQEVPMYTGSEPRQEVPMYTGPESRQEVPMYTGPESRQEVLIRTD
PESRQEIMCTGHESKQEVPICTDPISKQEDSMCTHAEINQKLPVATDFEFKLEALMCTNPEIKQEDPTNV
GPEVKQQVTMVSDTEILKVARTHHVQAESYLVYNIMSSGEIECSNTLEDELDQALPSQAFIYRPIRQRVY
SLLLEDCQDVTSTCLAVKEWFVYPGNPLRHPDLVRPLQMTIPGGTPSLKILWLNQEPEIQVRRLDTLLAC
FNLSSSREELQAVESPFQALCCLLIYLFVQVDTLCLEDLHAFIAQALCLQGKSTSQLVNLQPDYINPRAV
QLGSLLVRGLTTLVLVNSACGFPWKTSDFMPWNVFDGKLFHQKYLQSEKGYAVEVLLEQNRSRLTKFHNL
KAVVCKACMKENRRITGRAHWGSHHAGRWGRQGSSYHRTGSGYSRSSQGQPWRDQGPGSRQYEHDQWRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH