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Report for CCDS52748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52748.1 Public Mus musculus 9 Aplp2 23 108 98 CCDS HistoryNCBI Gene:11804Re-query CCDS DB by CCDS ID:52748.1Re-query CCDS DB by GeneID:11804See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079758.8 ENSMUSP00000078694.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079758.8Link to Ensembl Protein Viewer:ENSMUSP00000078694.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000079758Re-query CCDS DB by Protein ID:ENSMUSP00000078694
Original member Current member NCBI NM_001102456.2 NP_001095926.1 Accepted alive Link to Nucleotide Sequence:NM_001102456.2Link to Protein Sequence:NP_001095926.1Re-query CCDS DB by Nucleotide ID:NM_001102456Re-query CCDS DB by Protein ID:NP_001095926Link to BLAST:NP_001095926.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095926.1 707 Q06335-1 707 100% 0 0

Chromosomal Locations for CCDS 52748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 31150871 31150972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31151837 31151992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31152313 31152387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31153414 31153499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31156190 31156225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31157695 31157847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31158499 31158598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31161227 31161355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31161759 31161917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31163346 31163420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31164543 31164673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31168708 31168916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31170437 31170633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31171934 31172046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31177018 31177141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31177905 31178078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 31211623 31211727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2124 nt):
ATGGCGGCCACCGGGACCGCGGCCGCTGCGGCCACCGGCAAGCTTCTTGTCCTGCTGCTGCTCGGGCTCA
CGGCGCCCGCTGCGGCTCTGGCTGGCTACATAGAGGCTCTTGCAGCCAATGCTGGAACAGGCTTCGCTGT
TGCTGAGCCTCAGATTGCGATGTTCTGTGGGAAGCTGAATATGCATGTGAACATTCAGACTGGCAAATGG
GAGCCTGACCCAACAGGCACCAAGAGCTGCCTTGGAACAAAGGAGGAGGTTCTTCAGTACTGCCAGGAGA
TATATCCAGAGCTGCAGATCACAAATGTGATGGAAGCAAACCAGCCAGTCAATATTGATAGTTGGTGCCG
AAGGGACAAAAGGCAGTGCAAGAGTCACATTGTTATACCATTCAAGTGTCTTGTGGGTGAATTTGTAAGT
GATGTCCTGCTAGTTCCAGATAACTGCCAGTTTTTCCACCAAGAGCGGATGGAGGTGTGTGAGAAGCACC
AGCGCTGGCACACGTTAGTCAAGGAGGCATGTCTGACTGAGGGGCTGACCTTATATAGCTATGGCATGCT
GCTGCCCTGCGGGGTAGACCAGTTCCATGGCACCGAGTATGTGTGCTGCCCTCAGACAAAGACTGTTGAC
TCGGACTCGACTATGTCCAAAGAAGAGGAGGAAGAGGAAGAGGATGAAGAGGACGAAGAGGAAGACTATG
ATCTTGATAAAAGTGAATTTCCTACTGAAGCAGATTTGGAAGACTTCACAGAAGCAGCAGCAGATGAGGA
AGAAGAGGATGAGGAGGAAGGGGAGGAAGTGGTGGAAGACCGTGACTACTACTATGACCCCTTTAAAGGA
GACGATTACAATGAGGAGAATCCAACCGAACCCAGCAGCGAGGGCACCATTTCAGACAAGGAGATTGTTC
ACGATGTTAAAGTTCCCCCGACTCCCCTGCCAACCAATGATGTTGATGTGTATTTTGAGACCTCAGCGGA
TGATAATGAGCACGCCCGCTTCCAGAAGGCTAAGGAACAGCTGGAAATTCGACATCGAAACCGAATGGAC
AGGGTAAAGAAGGAATGGGAAGAGGCAGAACTTCAAGCCAAGAACCTCCCCAAGACAGAAAGACAGACCC
TCATCCAGCATTTCCAAGCTATGGTTAAAGCTTTAGAGAAAGAAGCAGCCAGTGAGAAGCAGCAGCTTGT
GGAAACCCATCTGGCCCGAGTAGAAGCCATGCTGAATGACCGCCGACGCATAGCTCTGGAAAATTACCTG
GCTGCCCTGCAGTCTGACCCACCTCGGCCACATCGCATTCTTCAAGCTCTTCGTCGTTACGTCCGTGCTG
AGAACAAAGATCGCCTGCATACCATTCGTCATTACCAACACGTGTTGGCTGTTGACCCAGAAAAGGCCGC
CCAGATGAAATCCCAGGTGATGACACACCTCCATGTGATTGAAGAAAGAAGGAACCAAAGTCTTTCTCTT
CTGTACAAAGTTCCTTATGTTGCTCAAGAAATTCAAGAGGAAATTGATGAGCTCCTTCAGGAACAGCGAG
CGGATATGGACCAATTTACCTCCTCCATCTCAGAGAACCCTGTGGATGTCCGGGTGAGCTCTGAGGAGAG
TGAGGAGATCCCGCCGTTCCACCCTCTCCATCCCTTCCCATCCTTGTCTGAGAATGAAGACACTCAGCCG
GAGTTGTACCACCCAATGAAAAAAGGCTCTGGAATGGCAGAACAAGACGGGGGACTGATTGGTGCAGAAG
AAAAAGTGATTAACAGCAAGAATAAAATGGATGAAAATATGGTCATTGACGAGACTCTGGATGTTAAGGA
AATGATTTTCAATGCTGAGAGAGTTGGAGGCCTTGAGGAAGAGCCGGAATCGGTGGGACCTTTAAGGGAG
GATTTCAGTTTGAGCAGCAATGCCCTTATTGGCTTGCTGGTTATCGCAGTGGCCATTGCTACGGTCATCG
TTATCAGCCTGGTGATGCTGAGGAAGAGGCAGTACGGCACCATCAGCCACGGGATTGTGGAGGTTGACCC
AATGCTCACCCCAGAAGAGCGTCACCTGAACAAGATGCAGAACCATGGTTATGAAAACCCAACCTACAAA
TACCTGGAGCAGATGCAGATTTAA

Translation (707 aa):
MAATGTAAAAATGKLLVLLLLGLTAPAAALAGYIEALAANAGTGFAVAEPQIAMFCGKLNMHVNIQTGKW
EPDPTGTKSCLGTKEEVLQYCQEIYPELQITNVMEANQPVNIDSWCRRDKRQCKSHIVIPFKCLVGEFVS
DVLLVPDNCQFFHQERMEVCEKHQRWHTLVKEACLTEGLTLYSYGMLLPCGVDQFHGTEYVCCPQTKTVD
SDSTMSKEEEEEEEDEEDEEEDYDLDKSEFPTEADLEDFTEAAADEEEEDEEEGEEVVEDRDYYYDPFKG
DDYNEENPTEPSSEGTISDKEIVHDVKVPPTPLPTNDVDVYFETSADDNEHARFQKAKEQLEIRHRNRMD
RVKKEWEEAELQAKNLPKTERQTLIQHFQAMVKALEKEAASEKQQLVETHLARVEAMLNDRRRIALENYL
AALQSDPPRPHRILQALRRYVRAENKDRLHTIRHYQHVLAVDPEKAAQMKSQVMTHLHVIEERRNQSLSL
LYKVPYVAQEIQEEIDELLQEQRADMDQFTSSISENPVDVRVSSEESEEIPPFHPLHPFPSLSENEDTQP
ELYHPMKKGSGMAEQDGGLIGAEEKVINSKNKMDENMVIDETLDVKEMIFNAERVGGLEEEPESVGPLRE
DFSLSSNALIGLLVIAVAIATVIVISLVMLRKRQYGTISHGIVEVDPMLTPEERHLNKMQNHGYENPTYK
YLEQMQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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