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Report for CCDS5270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5270.1 Public Homo sapiens 6 MRPL18 24 110 108 CCDS HistoryNCBI Gene:29074Re-query CCDS DB by CCDS ID:5270.1Re-query CCDS DB by GeneID:29074See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5270.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367034.5 ENSP00000356001.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367034.5Link to Ensembl Protein Viewer:ENSP00000356001.4Re-query CCDS DB by Nucleotide ID:ENST00000367034Re-query CCDS DB by Protein ID:ENSP00000356001
Original member Current member NCBI NM_014161.5 NP_054880.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014161.5Link to Protein Sequence:NP_054880.2Re-query CCDS DB by Nucleotide ID:NM_014161Re-query CCDS DB by Protein ID:NP_054880Link to BLAST:NP_054880.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054880.2 180 Q9H0U6 180 100% 0 0

Chromosomal Locations for CCDS 5270.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 159790588 159790639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159790940 159791126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159797287 159797518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 159798052 159798123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCGCTTCGGTCGCGGTTTTGGGGGTTGTTCTCGGTTTGCAGGAACCCTGGGTGCAGGTTCGCAGCCC
TGTCAACCAGCTCCGAGCCGGCAGCGAAACCTGAAGTGGACCCTGTGGAAAATGAAGCTGTCGCCCCAGA
ATTCACCAACCGGAACCCCCGGAACCTGGAGCTTTTATCTGTAGCCAGGAAAGAGCGGGGCTGGCGGACG
GTGTTTCCCTCCCGTGAGTTCTGGCACAGGTTGCGAGTTATAAGGACTCAGCATCATGTAGAAGCACTTG
TGGAGCATCAGAATGGCAAGGTTGTGGTTTCGGCCTCCACTCGTGAGTGGGCTATTAAAAAGCACCTTTA
TAGTACCAGAAATGTGGTGGCTTGTGAGAGTATAGGACGAGTGCTGGCACAGAGATGCTTAGAGGCGGGA
ATCAACTTCATGGTCTACCAACCAACCCCGTGGGAGGCAGCCTCAGACTCGATGAAACGACTACAAAGTG
CCATGACAGAAGGTGGTGTGGTTCTACGGGAACCTCAGAGAATCTATGAATAA

Translation (180 aa):
MALRSRFWGLFSVCRNPGCRFAALSTSSEPAAKPEVDPVENEAVAPEFTNRNPRNLELLSVARKERGWRT
VFPSREFWHRLRVIRTQHHVEALVEHQNGKVVVSASTREWAIKKHLYSTRNVVACESIGRVLAQRCLEAG
INFMVYQPTPWEAASDSMKRLQSAMTEGGVVLREPQRIYE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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