NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52652.1 Public Mus musculus 8 Ces3a 23 108 98 CCDS HistoryNCBI Gene:382053Re-query CCDS DB by CCDS ID:52652.1Re-query CCDS DB by GeneID:382053See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093223.4 ENSMUSP00000090911.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093223.4Link to Ensembl Protein Viewer:ENSMUSP00000090911.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093223Re-query CCDS DB by Protein ID:ENSMUSP00000090911
Original member Current member NCBI NM_001164681.1 NP_001158153.1 Accepted alive Link to Nucleotide Sequence:NM_001164681.1Link to Protein Sequence:NP_001158153.1Re-query CCDS DB by Nucleotide ID:NM_001164681Re-query CCDS DB by Protein ID:NP_001158153Link to BLAST:NP_001158153.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158153.1 524 Q63880-2 524 100% 0 0

Chromosomal Locations for CCDS 52652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105048621 105048711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105049873 105050077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105050183 105050321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105050482 105050615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105051468 105051621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105051732 105051836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105053356 105053448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105055579 105055659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105056384 105056531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105057461 105057610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105057736 105057814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105057908 105058103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1575 nt):
ATGACAAATATGGAGACAACGGCACAAGCTGGGTCCAGTGTCCGAGTCTGGATGGCCTGTCTGCTCCTGA
TATTTCCTACCACTGTCATTGGACCCAAAGTCACTCAGCCTGAAGTGGATACCCCCCTGGGTCGTGTTCG
AGGCCGGCAGGTGGGTGTGAAGGACACAGACCGCATGGTAAATGTCTTCCTGGGCATCCCCTTTGCTCAA
GCACCACTGGGACCTCTTCGGTTCTCAGCTCCACTCCCACCACAGCCCTGGGAAGGTGTGAGAGATGCCA
GCATCAATCCCCCAATGTGCCTTCAGGATGTAGAGAGAATGAGCAACAGCAGATTCACCCTCAATGAAAA
GATGAAAATCTTCCCCATTTCTGAGGACTGCCTGACCCTCAACATCTACAGCCCCACTGAGATCACTGCA
GGGGACAAAAGGCCGGTCATGGTATGGATCCACGGAGGCTCTCTGCTGGTTGGCTCCTCCACATCTCATG
ATGGATCAGCACTGGCTGCCTATGGGGATGTGGTAGTTGTCACTGTCCAGTATCGCCTTGGGATCTTTGG
CTTCCTCAGCACTGGAGACAAGCACATGCCAGGCAACAGGGGATTCCTGGATGTGGTGGCTGCTCTTCGC
TGGGTCCAGGGGAACATAGCCCCCTTTGGGGGTGATCCCAACTGTGTCACTATCTTCGGTAACTCTGCTG
GAGGCATTATTGTCTCATCCCTGCTCCTGTCTCCAATGTCTGCTGGGCTCTTCCACAGAGCCATATCGCA
GAGTGGGGTTGTCATCAGCAAGATTCTGGAAGACTTGAATGCATGGTCTGAAGCTCAGAACTTTGCCAAT
TCTGTGGCCTGTGGCTCTGCATCCCCAGCTGAGCTGGTCCAGTGTTTGCTGCAGAAGGAAGGAAAGGACC
TTATCACGAAGTTCTGGAATATCCTGGATAAGATGGAACATTTGAGCCAGGAAGACCTGTTGGAGAATTC
AAGGCCCTTATTAGCCCATATGCAACTGCCCCCTGAGATCATGCCCACCGTCATAGATGAATACCTAGAC
AATGGCTCAGATGAATCAGCTACAAGGTATGCCCTCCAGGAATTGCTGGGTGATATCACATTGGTCATTC
CTACCTTGATCTTCTCAAAATACCTTCAAGATGCTGGGTGCCCTGTTTTCTTGTACGAGTTCCAGCATAC
ACCCAGTTCTTTTGCAAAGTTCAAGCCAGCCTGGGTGAAGGCTGACCATTCCTCTGAGAATGCCTTTGTT
TTTGGAGGTCCTTTCCTCACTGATGAGAGTTCCCTCCTGGCCTTCCCAGAGGCCACAGAGGAAGAGAAGC
AGCTGAGCCTGACCATGATGGCCCAATGGAGCCAGTTTGCACGCACAGGAAATCCCAATGGCAAGGGGCT
GCCTCCTTGGCCCCAATTAAACCAGTTAGAACAATACTTGGAGATTGGTCTAGAACCACGGACTGGGGTG
AAGCTAAAGAAGGGTCGGCTACAGTTCTGGACAGAGACACTGCCAAGAAAAATTCAAGAATGGCACCGAG
AGCAGAGAAGCAGGAAAGTTCCAGAGGAGCTCTGA

Translation (524 aa):
MTNMETTAQAGSSVRVWMACLLLIFPTTVIGPKVTQPEVDTPLGRVRGRQVGVKDTDRMVNVFLGIPFAQ
APLGPLRFSAPLPPQPWEGVRDASINPPMCLQDVERMSNSRFTLNEKMKIFPISEDCLTLNIYSPTEITA
GDKRPVMVWIHGGSLLVGSSTSHDGSALAAYGDVVVVTVQYRLGIFGFLSTGDKHMPGNRGFLDVVAALR
WVQGNIAPFGGDPNCVTIFGNSAGGIIVSSLLLSPMSAGLFHRAISQSGVVISKILEDLNAWSEAQNFAN
SVACGSASPAELVQCLLQKEGKDLITKFWNILDKMEHLSQEDLLENSRPLLAHMQLPPEIMPTVIDEYLD
NGSDESATRYALQELLGDITLVIPTLIFSKYLQDAGCPVFLYEFQHTPSSFAKFKPAWVKADHSSENAFV
FGGPFLTDESSLLAFPEATEEEKQLSLTMMAQWSQFARTGNPNGKGLPPWPQLNQLEQYLEIGLEPRTGV
KLKKGRLQFWTETLPRKIQEWHREQRSRKVPEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH