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Report for CCDS52651.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52651.1 Public Mus musculus 8 Ces3a 23 108 98 CCDS HistoryNCBI Gene:382053Re-query CCDS DB by CCDS ID:52651.1Re-query CCDS DB by GeneID:382053See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52651.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093222.12 ENSMUSP00000090910.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093222.12Link to Ensembl Protein Viewer:ENSMUSP00000090910.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093222Re-query CCDS DB by Protein ID:ENSMUSP00000090910
Original member Current member NCBI NM_198672.1 NP_941074.1 Accepted alive Link to Nucleotide Sequence:NM_198672.1Link to Protein Sequence:NP_941074.1Re-query CCDS DB by Nucleotide ID:NM_198672Re-query CCDS DB by Protein ID:NP_941074Link to BLAST:NP_941074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_941074.1 571 Q63880-1 571 100% 0 0

Chromosomal Locations for CCDS 52651.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105048621 105048711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105049873 105050077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105050183 105050321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105050482 105050615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105051468 105051621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105051732 105051836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105053356 105053448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105053544 105053684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105055579 105055659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105056384 105056531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105057461 105057610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105057736 105057814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 105057908 105058103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1716 nt):
ATGACAAATATGGAGACAACGGCACAAGCTGGGTCCAGTGTCCGAGTCTGGATGGCCTGTCTGCTCCTGA
TATTTCCTACCACTGTCATTGGACCCAAAGTCACTCAGCCTGAAGTGGATACCCCCCTGGGTCGTGTTCG
AGGCCGGCAGGTGGGTGTGAAGGACACAGACCGCATGGTAAATGTCTTCCTGGGCATCCCCTTTGCTCAA
GCACCACTGGGACCTCTTCGGTTCTCAGCTCCACTCCCACCACAGCCCTGGGAAGGTGTGAGAGATGCCA
GCATCAATCCCCCAATGTGCCTTCAGGATGTAGAGAGAATGAGCAACAGCAGATTCACCCTCAATGAAAA
GATGAAAATCTTCCCCATTTCTGAGGACTGCCTGACCCTCAACATCTACAGCCCCACTGAGATCACTGCA
GGGGACAAAAGGCCGGTCATGGTATGGATCCACGGAGGCTCTCTGCTGGTTGGCTCCTCCACATCTCATG
ATGGATCAGCACTGGCTGCCTATGGGGATGTGGTAGTTGTCACTGTCCAGTATCGCCTTGGGATCTTTGG
CTTCCTCAGCACTGGAGACAAGCACATGCCAGGCAACAGGGGATTCCTGGATGTGGTGGCTGCTCTTCGC
TGGGTCCAGGGGAACATAGCCCCCTTTGGGGGTGATCCCAACTGTGTCACTATCTTCGGTAACTCTGCTG
GAGGCATTATTGTCTCATCCCTGCTCCTGTCTCCAATGTCTGCTGGGCTCTTCCACAGAGCCATATCGCA
GAGTGGGGTTGTCATCAGCAAGATTCTGGAAGACTTGAATGCATGGTCTGAAGCTCAGAACTTTGCCAAT
TCTGTGGCCTGTGGCTCTGCATCCCCAGCTGAGCTGGTCCAGTGTTTGCTGCAGAAGGAAGGAAAGGACC
TTATCACGAAGAAAAACGTGAACATTTCCTACACAGTCAATGACTCCTTCTTCCCACAAAGGCCCCAGAA
GCTCCTAGCAAACAAGCAATTCCCCACTGTGCCCTACCTCTTGGGAGTCACCAACCATGAGTTTGGCTGG
CTTCTACTCAAATTCTGGAATATCCTGGATAAGATGGAACATTTGAGCCAGGAAGACCTGTTGGAGAATT
CAAGGCCCTTATTAGCCCATATGCAACTGCCCCCTGAGATCATGCCCACCGTCATAGATGAATACCTAGA
CAATGGCTCAGATGAATCAGCTACAAGGTATGCCCTCCAGGAATTGCTGGGTGATATCACATTGGTCATT
CCTACCTTGATCTTCTCAAAATACCTTCAAGATGCTGGGTGCCCTGTTTTCTTGTACGAGTTCCAGCATA
CACCCAGTTCTTTTGCAAAGTTCAAGCCAGCCTGGGTGAAGGCTGACCATTCCTCTGAGAATGCCTTTGT
TTTTGGAGGTCCTTTCCTCACTGATGAGAGTTCCCTCCTGGCCTTCCCAGAGGCCACAGAGGAAGAGAAG
CAGCTGAGCCTGACCATGATGGCCCAATGGAGCCAGTTTGCACGCACAGGAAATCCCAATGGCAAGGGGC
TGCCTCCTTGGCCCCAATTAAACCAGTTAGAACAATACTTGGAGATTGGTCTAGAACCACGGACTGGGGT
GAAGCTAAAGAAGGGTCGGCTACAGTTCTGGACAGAGACACTGCCAAGAAAAATTCAAGAATGGCACCGA
GAGCAGAGAAGCAGGAAAGTTCCAGAGGAGCTCTGA

Translation (571 aa):
MTNMETTAQAGSSVRVWMACLLLIFPTTVIGPKVTQPEVDTPLGRVRGRQVGVKDTDRMVNVFLGIPFAQ
APLGPLRFSAPLPPQPWEGVRDASINPPMCLQDVERMSNSRFTLNEKMKIFPISEDCLTLNIYSPTEITA
GDKRPVMVWIHGGSLLVGSSTSHDGSALAAYGDVVVVTVQYRLGIFGFLSTGDKHMPGNRGFLDVVAALR
WVQGNIAPFGGDPNCVTIFGNSAGGIIVSSLLLSPMSAGLFHRAISQSGVVISKILEDLNAWSEAQNFAN
SVACGSASPAELVQCLLQKEGKDLITKKNVNISYTVNDSFFPQRPQKLLANKQFPTVPYLLGVTNHEFGW
LLLKFWNILDKMEHLSQEDLLENSRPLLAHMQLPPEIMPTVIDEYLDNGSDESATRYALQELLGDITLVI
PTLIFSKYLQDAGCPVFLYEFQHTPSSFAKFKPAWVKADHSSENAFVFGGPFLTDESSLLAFPEATEEEK
QLSLTMMAQWSQFARTGNPNGKGLPPWPQLNQLEQYLEIGLEPRTGVKLKKGRLQFWTETLPRKIQEWHR
EQRSRKVPEEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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