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Report for CCDS52646.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52646.1 Public Mus musculus 8 Bean1 23 108 98 CCDS HistoryNCBI Gene:65115Re-query CCDS DB by CCDS ID:52646.1Re-query CCDS DB by GeneID:65115See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52646.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093245.12 ENSMUSP00000090931.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093245.12Link to Ensembl Protein Viewer:ENSMUSP00000090931.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000093245Re-query CCDS DB by Protein ID:ENSMUSP00000090931
Original member Current member EBI ENSMUST00000167633.7 ENSMUSP00000131530.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167633.7Link to Ensembl Protein Viewer:ENSMUSP00000131530.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167633Re-query CCDS DB by Protein ID:ENSMUSP00000131530
Original member NCBI NM_001141924.1 NP_001135396.1 Updated not alive Link to Nucleotide Sequence:NM_001141924.1Link to Protein Sequence:NP_001135396.1Re-query CCDS DB by Nucleotide ID:NM_001141924Re-query CCDS DB by Protein ID:NP_001135396
Current member NCBI NM_001141924.2 NP_001135396.1 Accepted alive Link to Nucleotide Sequence:NM_001141924.2Link to Protein Sequence:NP_001135396.1Re-query CCDS DB by Nucleotide ID:NM_001141924Re-query CCDS DB by Protein ID:NP_001135396Link to BLAST:NP_001135396.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135396.1 255 Q9EQG5-1 255 100% 0 0

Chromosomal Locations for CCDS 52646.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104182095 104182119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104210918 104211169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104215014 104215164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104216928 104217267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (768 nt):
ATGTCCTTCAAACGCCCTTGCCCCTTAGCACGATACAACCGTACCAGCTATTTCTACCCTACCACGTTCT
CCGAGAGCTCTGAGCACAGCCACCTGCTGGTGTCTCCGGTGCTGGTGGCGAGCGCTGTCATAGGTGTGGT
CATCACTCTCTCCTGCATCACCATCATTGTGGGAAGCATCAGAAGGGACAGACAGGCCCGGATCCAGCGA
CACCACCATCGTCACCGCCGCCATCATCACCATCACCGCCACCGCAGGCGCCGACACCGAGAATACGCAT
CTGGAGGACACACACACAGCCGTTCTAGCCCCAGGATGCCCTATGCCTGCAGCCCTGCTGAGGACTGGCC
ACCGCCCTTGGACGTCAGCTCCGAGGGGGATGTGGATGTCACAGTGCTCTGGGAGCTGTACCCAGATTCT
CCACCAGGCTATGAGGAATGCATGGGACCAGGGGCCACTCAGCTGTATGTCCCCACGGATGCACCACCGC
CCTACTCCATGACTGACTCCTGTCCCAGGCTGAATGGCGCCCTTGACTCAGACAGCGGCCAGAGCCGCAG
CCACCGTCAGCAAGAGCAGAGGACCCAGGGTCAGAGCAGACTCCACACTGTCTCCATGGACACACTGCCA
CCTTATGAAGCTGTGTGTGGGACAGGCTCTCCATCTGACCTGCTGCCATTGCCAGGACCAGAACCATGGC
CAAGTAACTCCCAGGGCTCACCCATCCCAACCCAGGCTCCGATGCCCAGCCCTGAAAGGATTGTGTGA

Translation (255 aa):
MSFKRPCPLARYNRTSYFYPTTFSESSEHSHLLVSPVLVASAVIGVVITLSCITIIVGSIRRDRQARIQR
HHHRHRRHHHHHRHRRRRHREYASGGHTHSRSSPRMPYACSPAEDWPPPLDVSSEGDVDVTVLWELYPDS
PPGYEECMGPGATQLYVPTDAPPPYSMTDSCPRLNGALDSDSGQSRSHRQQEQRTQGQSRLHTVSMDTLP
PYEAVCGTGSPSDLLPLPGPEPWPSNSQGSPIPTQAPMPSPERIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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