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Report for CCDS52530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52530.1 Public Mus musculus 8 Kcnu1 23 108 98 CCDS HistoryNCBI Gene:16532Re-query CCDS DB by CCDS ID:52530.1Re-query CCDS DB by GeneID:16532See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52530.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098858.10 ENSMUSP00000096457.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098858.10Link to Ensembl Protein Viewer:ENSMUSP00000096457.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098858Re-query CCDS DB by Protein ID:ENSMUSP00000096457
Original member Current member NCBI NM_008432.3 NP_032458.3 Accepted alive Link to Nucleotide Sequence:NM_008432.3Link to Protein Sequence:NP_032458.3Re-query CCDS DB by Nucleotide ID:NM_008432Re-query CCDS DB by Protein ID:NP_032458Link to BLAST:NP_032458.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032458.3 1121 O54982-1 1121 100% 0 0

Chromosomal Locations for CCDS 52530.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 25849656 25849850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25851824 25851943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25858123 25858184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25859223 25859313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25861079 25861190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25862387 25862462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25865626 25865701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25881297 25881467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25883613 25883704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25885255 25885365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25886706 25886811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25889962 25890044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25891533 25891602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25891989 25892141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25896609 25896721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25897791 25897859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25899736 25899825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25899948 25900045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25905877 25906012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25910850 25910946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25913584 25913808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25918289 25918475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25919584 25919661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25921420 25921559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25932240 25932434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25934405 25934517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 25937496 25937802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3366 nt):
ATGTCTCAAACATTGCTAGACAGTTTAAATCAGAAGGAGTTGACGGAAACGTCATGTACAATCGAAATCC
AGGCAGCGTTCATTCTTTCCTCCTTGGCGACTTTCTTCGGGGGACTCATCATCTTATTCCTTTTCAGAAT
AGCCTTGAAAAGCTCAAGAAGTTGGAAATACGTCAAGGGGCCAAGAGGACTCTTGGAACTATTCTCATCA
CGTAGAATCGAGGCTAATCCTTTGAGGAAACTTTACTTTCATGGAGTATTTCGTCAGCGCATCGAAATGC
TGCTTTCTGCACAGACCGTCGTGGGGCAAGTGTTGGTGATCCTTGTCTTTGTACTAAGCATCGGGTCTCT
TGTGATCTATTTCATCAATTCAATGGATCCTGTTCGAAGGTGTTCTTCATATGAAGACAAAATTGTCCAT
GTGGATTTGAGTTTCAACGCTTTCTTTAGCTTCTATTTTGGGTTGAGGTTTTGGGCAGCTGAAGACAAGA
TCAAGTTCTGGTTGGAGATGAATTCAATTGTAGACATTTTTACCATCCCGCCAACCTTTATTTCTTATTA
TTTGAAGAGTAATTGGCTAGGTTTGAGATTTCTAAGAGCTCTGCGGTTGCTCGAACTCCCTAAAATCTTA
CAGATCCTACAAGTCATCAAGACCAGCAATTCAGTGAAGCTTTCCAAACTGTTGTCAATAGTTATCAGTA
CCTGGTTCACGGCAGCAGGATTCCTTCACCTGGTGGAAAATTCTGGTGACCCCTGGCTCAACGGAAGAAA
CTCACAGACTATGTCATACTTTGAGTCTATTTATCTGGTGACAGCAACAATGTCAACTGTTGGCTTTGGG
GACGTGGTGGCCAAGACATCCCTAGGACGGATTTTCATTGTTTTCTTCACCCTTGGGAGTTTGATACTAT
TTGCAAACTACATTCCAGAAATGGTGGAGCTCTTTTCTACCAGGAAGAAATACACCAAGCCCTACGAAGC
AGTCAAAGGAAAAAAGTTCATCGTGGTCTGTGGAAACATCACAGTTGACAGTGTTACTGCTTTCCTGAGG
AATTTTCTCCACTGGAAGTCCGGGGAAATCAATATTGAGATCGTATTCCTTGGAGAGACTCTCCCTTGCT
TGGAACTGGAGACCTTACTGAAGTGCCACACATCCTGTACCAACTTCGTATGCGGCACCGCACTGAAGTT
CGAGGATCTGAAGCGAGTTGCAGTGGAGAACTCGGAGGCGTGCCTGATTCTAGCCAACCATTTCTGTAGT
GACTTACATGACGAAGACAACTCAAACATTATGAGGGTGCTCTCGATCAAGAACTATTATCCACAGACCA
GAGTCATCATTCAGATACTTCAGTCTCAAAACAAGGTTTTCCTGTCAAAAATCCCCAACTGGGACTGGAG
TGCTGGAGACAATATCCTCTGCTTTGCAGAGCTAAAGCTCGGATTTATCGCCCAAGGCTGCTTGGTGCCA
GGGCTGTGCACCTTTCTCACGACTCTGTTCATTGAACAAAACCAAAAGGTTTTTCCTAAACATCCCTGGC
AAAAACATTTCTTGAATGGCTTGAAGAACAAGATTCTGACACAGCGCCTCTCTAACGACTTCGTGGGGAT
GACATTTCCCCAGGTCTCCCGGCTCTGCTTTGTGAAGCTAAATCTCATGCTGATCGCCATCCAACACAAG
CCCTTCTTTCACAGTTGTTGCACTCTGATACTAAACCCATCATCCCAAGTGAGGCTGAATAAGGACACCT
TAGGGTTCTTCATTGCGGACTCCTCCAAAGCCGTCAAAAGGGCTTTCTTTTACTGTTCCAACTGTCACAG
CGATGTGTGCAATCCTGAGCTAATTGGAAAGTGTAACTGTAAAATCAAGAGCCGACAACAACTCATAGCA
CCGACCATCATGGTGATGAAAAGCAGCTTGACCGATTTCACCACTTCTTCACACATCCACGCTTCTATGT
CAACAGAAATTCACACTTGTTTTTCAAGAGAACAGCCTAGTTTGATCACCATTACAACCAACAGACCAAC
GACAAACGACACAGTGGATGATACCGACATGCTGGACAGCAGTGGCATGTTTCACTGGTGCAGAGCAATG
CCCTTGGACAAGGTGGTTCTGAAACGAAGTGAGAAGGCAAAACACGAGTTTCAGAACCACATTGTAGTAT
GCGTGTTTGGAGATGCCCAATGTACCCTGGTGGGGCTTCGGAATTTCGTGATGCCCCTGAGAGCCAGCAA
CTACACCCGGCAGGAGCTGAAGGACATTGTTTTTATTGGGTCTCTGGAGTACTTCCAGAGAGAATGGCGA
TTTCTCCGAAACTTTCCCAAGATACACATTATGCCTGGATCTGCACTCTACATGGGAGATCTGATTGCAG
TCAATGTAGAGCAGTGCTCTATGTGCGTCATCTTAGCCACACCCTACAAGGCACTGAGCAGCCAGATTCT
GGTGGACACAGAGGCCATCATGGCCACCCTCAACATCCAGTCCCTGCGGATCACCAGTCCTACTCCAGGG
TCTTCAAAGTCAGAAGTAAAGCCATCATCTGCCTTTGATAGTAAAGAAAGGAAGCAAAGATACAAACAGA
TCCCCATTCTCACTGAACTGAAGAATCCCTCCAACATCCACTTTATTGAGCAGATGGGCGGACTGGATGG
AATGCTCAAAGGGACTAGCTTGCATCTCAGCACTTCTTTCTCCACCGGTGCTGTCTTTTCAGACACCTTC
TTGGATTCTCTCCTGGCCACGTCCTTCTACAATTACCATGTCGTGGAATTACTTCAGATGCTAGTGACTG
GAGGCATAAGCTCTGAGATGGAACACTATTTGGTTAAGGAGAAGCCCTATAAGACAACTGACGACTATGA
GGCAATCAAGTCTGGGAGGACGCGGTGTAAGCTGGGACTCCTCTCTTTAGACCAAACCGTTCTATCAGGC
ATTAATCCAAGAAAAACCTTTGGACAGCTGTTCTGTGGCTCATTGGATAATTTCGGGATCCTATGTGTCG
GCTTATACCGTATGATTGATGAAGAGGAACCCAGCCAAGAACACAAAAGGTTTGTGATCACCAGGCCATC
CAATGAGTGCCACCTGCTGCCCTCAGATCTCGTGTTTTGTGCCATCCCTTTCAACACCACCTGTGGCAAA
TCAGACAGCAGTCCTTCAATTCAGGCTCAAAACAACTCTACAAACGCGACGACGCCATTGGCCCAGGGGT
CGAATTTCTTCGATTCGCACCATGCCGACGAGTCCCACGATCTTTACCCAGTCGACGACACGGGAGAGAG
GTGGTCTCAGCACCACCACTCCCGAGTCTATCCTTTGGACACGTTAGATGCCAGTGATATTGTTCAAGAA
AAATAA

Translation (1121 aa):
MSQTLLDSLNQKELTETSCTIEIQAAFILSSLATFFGGLIILFLFRIALKSSRSWKYVKGPRGLLELFSS
RRIEANPLRKLYFHGVFRQRIEMLLSAQTVVGQVLVILVFVLSIGSLVIYFINSMDPVRRCSSYEDKIVH
VDLSFNAFFSFYFGLRFWAAEDKIKFWLEMNSIVDIFTIPPTFISYYLKSNWLGLRFLRALRLLELPKIL
QILQVIKTSNSVKLSKLLSIVISTWFTAAGFLHLVENSGDPWLNGRNSQTMSYFESIYLVTATMSTVGFG
DVVAKTSLGRIFIVFFTLGSLILFANYIPEMVELFSTRKKYTKPYEAVKGKKFIVVCGNITVDSVTAFLR
NFLHWKSGEINIEIVFLGETLPCLELETLLKCHTSCTNFVCGTALKFEDLKRVAVENSEACLILANHFCS
DLHDEDNSNIMRVLSIKNYYPQTRVIIQILQSQNKVFLSKIPNWDWSAGDNILCFAELKLGFIAQGCLVP
GLCTFLTTLFIEQNQKVFPKHPWQKHFLNGLKNKILTQRLSNDFVGMTFPQVSRLCFVKLNLMLIAIQHK
PFFHSCCTLILNPSSQVRLNKDTLGFFIADSSKAVKRAFFYCSNCHSDVCNPELIGKCNCKIKSRQQLIA
PTIMVMKSSLTDFTTSSHIHASMSTEIHTCFSREQPSLITITTNRPTTNDTVDDTDMLDSSGMFHWCRAM
PLDKVVLKRSEKAKHEFQNHIVVCVFGDAQCTLVGLRNFVMPLRASNYTRQELKDIVFIGSLEYFQREWR
FLRNFPKIHIMPGSALYMGDLIAVNVEQCSMCVILATPYKALSSQILVDTEAIMATLNIQSLRITSPTPG
SSKSEVKPSSAFDSKERKQRYKQIPILTELKNPSNIHFIEQMGGLDGMLKGTSLHLSTSFSTGAVFSDTF
LDSLLATSFYNYHVVELLQMLVTGGISSEMEHYLVKEKPYKTTDDYEAIKSGRTRCKLGLLSLDQTVLSG
INPRKTFGQLFCGSLDNFGILCVGLYRMIDEEEPSQEHKRFVITRPSNECHLLPSDLVFCAIPFNTTCGK
SDSSPSIQAQNNSTNATTPLAQGSNFFDSHHADESHDLYPVDDTGERWSQHHHSRVYPLDTLDASDIVQE
K


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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