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Report for CCDS52492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52492.1 Public Mus musculus 8 Dlgap2 23 108 98 CCDS HistoryNCBI Gene:244310Re-query CCDS DB by CCDS ID:52492.1Re-query CCDS DB by GeneID:244310See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043279.8 ENSMUSP00000039647.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043279.8Link to Ensembl Protein Viewer:ENSMUSP00000039647.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000043279Re-query CCDS DB by Protein ID:ENSMUSP00000039647
Original member Current member EBI ENSMUST00000133298.7 ENSMUSP00000119613.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000133298.7Link to Ensembl Protein Viewer:ENSMUSP00000119613.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000133298Re-query CCDS DB by Protein ID:ENSMUSP00000119613
Original member Current member NCBI NM_172910.3 NP_766498.2 Accepted alive Link to Nucleotide Sequence:NM_172910.3Link to Protein Sequence:NP_766498.2Re-query CCDS DB by Nucleotide ID:NM_172910Re-query CCDS DB by Protein ID:NP_766498Link to BLAST:NP_766498.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766498.2 1059 Q8BJ42-1 1059 100% 0 0

Chromosomal Locations for CCDS 52492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 14179667 14179681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14257972 14258026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14531029 14531061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14695115 14695180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14726929 14727998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14743250 14743461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14773234 14773381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14778196 14778415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14822343 14822695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14823574 14823615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14829869 14829954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14831233 14831648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14839699 14839790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14843498 14843650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 14846490 14846708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3180 nt):
ATGGGGACGGCTCAGGTTCTGCCCGGCATCCTGCAGAAGCATTGCTGCATCTTACCAGACAGGAACACAG
AGTCTCAGTGCACCCTTTGTGGAGAGCCAGAAGAGGAGGAAGGAGGAGACTTGGCCCAGCCGGGCCTCAG
CTTCCCGGGTCCAGCAGAAGAGGACATAGACCAGCAGTACTCATGGTCTCCAACGCAGCACTTCAATGAA
GAGAGGTACTCACCCGCACCCAGGAACATGAAAGGGTTAACCGGAAGCCGGAACCAGCCTCAGCTGTGTG
CGGGTCACACCTGTGGCCTGTCACCCCCTGATGACTGCGAGCACCCCCATGATCACATGCATCATGGGTC
AGATGTGCGGCAGCCTTATCTCCTTAGCCCAGCTGAGAGCTGCCCAATGGACCACCACCGTTGCTCGCCC
AGGAGCTCCGTCCACTCAGAGTGCATGATGATGCCTGTGATGTTGGGTGACCACGTATCCAGTAGCACCT
TCCCTAGAATGCACTACAGCTCACACTATGACACAAGGGATGATTGCGCCATGTCCCACACAAGTACAAA
GGTAAACCGCATCCCCGCCAACCTCTTAGACCAGTTTGAGAAACAGCTCCCCCTGCACCGGGATGGTTTC
CACACACTGCAGTACCAGAGGGCCTCGGCTGCCACGGAACAGCGGAATGAGAGTCCAGGCAGAATCCGGC
ATTTGGTCCACTCCGTTCAGAAACTTTTCACCAAGTCTCATTCTTTGGAGGGATCGTCCAAGAGCAACAT
CAATGGGACCAAGAGTGACAGTCGTGTGGATGACCACCACCAGAGTCACCTTTCCAAACACAGCAAAAGG
AGTAAAAGCAAGGAGCGGAAGCCAGAGAGCAAGCACAAGTCTGGTATGAGCAGCTGGTGGAGTTCTGACG
ACAACCTGGACAGTGACAGCACATACCGGACACCCAGCGTGGCGCACCGCCACCACATGGACCACATTCC
CCACTGCTACCCTGAGGCGCTGCAGAGCCCATTTGGGGACCTCTCACTAAAGACTTCCAAAAGCAACAAC
GATGTTAAGTGCTCAGCCTGTGAAGGCTTGGCCCTCACGCCAGACACCAGGTACATGAAACGTAGCTCCT
GGTCCACGCTCACGGTGAGCCAGGCTAAGGAGGCCTACCGCAAGAGCTCCCTGAACTTGGACAAGCCCCT
GGTCCACCCAGAGATCAAGCCTTCCCTGCGGCCATGCCACTACCTCCAGGTGCCTCAGGACGATTGGGGT
GCGTACCCCACAGGCGGCAAAGAGGAGGAGATACCCTGCCGTAGGATGAGGAGCGGCAGCTACATAAAAG
CCATGGGTGACGAGGAGAGTGGGGAGTCAGACTCCAGCCCCAAAACATCCCCGACGGTGGCCATCCGGCC
GGAGCCGCTGCTGAAGCCCATCATACAAAGACCACTTGGAGACCACCAAACCCAGAGCTACCTACAAGCT
GCCACTGAGGTGCCTGTCGGTCACAGCCTGAACCCATCAATCAACTACAACTCTCCGAAGTTCCGGTCCA
GAAACCAGAGCTACATGCGGGCTGTGAGCACCCTGAGCCAGGCCAGCTGTGTGAGCCAGATGAGTGAAGC
GGAAGTTAACGGGCAGTTCGAGTCTGTATGTGAATCTGTCTTCAGTGAAGTTGAATCTCAGGCCATGGAT
GCTCTTGACCTTCCTGGGTGTTTCCGAACAAGGAGTCACAGTTACCTTCGAGCCATCCAAGCTGGTTACT
CCCAAGACGATGAATGTATTCCCGTGATGACATCATCCAACATGACGTCAACCATCAGGTCAACAGCAGC
TGTCTCCTACACAAATTACAAGAAGACGCCTCCCCCGGTGCCTCCACGGACCACCTCCAAGCCTCTGATC
TCTGTGACGGCCCAGAGCAGCACGGAATCGACACAGGATGCCTACCAGGACAGCCGTGCCCAGAGGATGT
CCCCCTGGCCCCAAGATAGCCGTGGCGGCCTCTACAACTCCATGGACAGTCTAGACAGCAACAAGGCCAT
GAATTTGGCTCTGGAAACAGCTGCAGCCCAGCGCCACGCGGCGGACACCCAGAGCAGCTCCACACGGAGC
ATCGACAAGGCGGTCCTGGCATCCAAGGCTGAAGAGCTCCTGAAAAGTCGCTGCTCCTCCATCGGGGTCC
AGGATTCTGAATTCCCCGATCATCAACCCTACCCAAGGTCAGATGTAGAAACAGCCACGGATTCCGACAC
GGAGAGCAGAGGCCTAAGGGAGTACCACTCTGTTGGTGTGCAAGTAGAAGACGAAAAACGGCACGGCCGT
TTCAAGCGTTCCAACAGCGTCACAGCCGCTGTGCAGGCTGACTTAGAGCTGGAGGGTTTCCCTGGGCATG
TCAGCATGGAGGACAAGGGCCTGCAGTTCGGATCCTCCTTCCAACGACATTCGGAGCCCAGTACCCCGAC
CCAGTATGGGGCACTGAGGACTGTGCGGACGCAGGGCCTCTTCAGTTACAGGGAGGACTACAGGACACAG
GTGGACACTTCTACTCTGCCACCACCGGATCCCTGGCTGGAGCCATCCCTGGACACGGTGGAGACCGGGA
GGATGTCTCCGTGCCGGAGAGATGGCTCGTGGTTTCTGAAACTGCTGCACACGGAGACGAAGAGGATGGA
AGGCTGGTGCAAAGAGATGGAGAGAGAAGCAGAGGAGAATGACCTCTTGGAAGACATTCTAGGAAAGATC
AGGAGTGCTGTAGGAAGTGCTCAGCTGCTCATGTCCCAGAAGTTCCAGCAGTTTTACTGGCTTTGTCAGC
AGAACATGGACCCCAGCGCCATGCCAAGACCCACCTCACAGGATCTAGCTGGCTATTGGGATATGCTGCA
GCTGTCTGTGGAAGATGTCAGCATGAAGTTTGACGAGCTGCACCAGCTGAAGCTCAATGACTGGAAGATA
ATAGAGTCACCCGAAAGAAAGGAAGAAAGGAAGATCCCCCCTCCAATACCAAAGAAGCCCCCCAAGGGGA
AATTCCCCATCACGAGGGAAAAGTCCTTGGACCTGCCAGACAGACAGCGCCAGGAAGCCCGGCGCCGGCT
CATGGCAGCCAAGAGAGCCGCCTCGTTCCGCCAGAACTCTGCTACGGAGAGGGCAGACAGCATCGAGATC
TACATCCCTGAGGCCCAGACGCGGCTCTGA

Translation (1059 aa):
MGTAQVLPGILQKHCCILPDRNTESQCTLCGEPEEEEGGDLAQPGLSFPGPAEEDIDQQYSWSPTQHFNE
ERYSPAPRNMKGLTGSRNQPQLCAGHTCGLSPPDDCEHPHDHMHHGSDVRQPYLLSPAESCPMDHHRCSP
RSSVHSECMMMPVMLGDHVSSSTFPRMHYSSHYDTRDDCAMSHTSTKVNRIPANLLDQFEKQLPLHRDGF
HTLQYQRASAATEQRNESPGRIRHLVHSVQKLFTKSHSLEGSSKSNINGTKSDSRVDDHHQSHLSKHSKR
SKSKERKPESKHKSGMSSWWSSDDNLDSDSTYRTPSVAHRHHMDHIPHCYPEALQSPFGDLSLKTSKSNN
DVKCSACEGLALTPDTRYMKRSSWSTLTVSQAKEAYRKSSLNLDKPLVHPEIKPSLRPCHYLQVPQDDWG
AYPTGGKEEEIPCRRMRSGSYIKAMGDEESGESDSSPKTSPTVAIRPEPLLKPIIQRPLGDHQTQSYLQA
ATEVPVGHSLNPSINYNSPKFRSRNQSYMRAVSTLSQASCVSQMSEAEVNGQFESVCESVFSEVESQAMD
ALDLPGCFRTRSHSYLRAIQAGYSQDDECIPVMTSSNMTSTIRSTAAVSYTNYKKTPPPVPPRTTSKPLI
SVTAQSSTESTQDAYQDSRAQRMSPWPQDSRGGLYNSMDSLDSNKAMNLALETAAAQRHAADTQSSSTRS
IDKAVLASKAEELLKSRCSSIGVQDSEFPDHQPYPRSDVETATDSDTESRGLREYHSVGVQVEDEKRHGR
FKRSNSVTAAVQADLELEGFPGHVSMEDKGLQFGSSFQRHSEPSTPTQYGALRTVRTQGLFSYREDYRTQ
VDTSTLPPPDPWLEPSLDTVETGRMSPCRRDGSWFLKLLHTETKRMEGWCKEMEREAEENDLLEDILGKI
RSAVGSAQLLMSQKFQQFYWLCQQNMDPSAMPRPTSQDLAGYWDMLQLSVEDVSMKFDELHQLKLNDWKI
IESPERKEERKIPPPIPKKPPKGKFPITREKSLDLPDRQRQEARRRLMAAKRAASFRQNSATERADSIEI
YIPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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