NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52434.1 Public Mus musculus 7 Scart2 23 108 98 CCDS HistoryNCBI Gene:244234Re-query CCDS DB by CCDS ID:52434.1Re-query CCDS DB by GeneID:244234See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093984.2 ENSMUSP00000091520.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093984.2Link to Ensembl Protein Viewer:ENSMUSP00000091520.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000093984Re-query CCDS DB by Protein ID:ENSMUSP00000091520
Original member Current member NCBI NM_001128145.1 NP_001121617.1 Accepted alive Link to Nucleotide Sequence:NM_001128145.1Link to Protein Sequence:NP_001121617.1Re-query CCDS DB by Nucleotide ID:NM_001128145Re-query CCDS DB by Protein ID:NP_001121617Link to BLAST:NP_001121617.1

Chromosomal Locations for CCDS 52434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 140247381 140247444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140247945 140248271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140248821 140249129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140294659 140294973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140295840 140296145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140296286 140296603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140296685 140296999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140297076 140297390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140297646 140297711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140297790 140298104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140298360 140298383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140298979 140299116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 140299613 140299791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2991 nt):
ATGGCATTCTCTTTTCTCAGACTTTGGCCTCTACTGCTGCTGACCTGCTGGACTCTCGTTCCTGATCTGG
CTCTTGAGAACTTCGTGAGTTTCCTGGGCGGTGATAATAAATGTGAAGGCCAAGTACGCTTGCGGAATGG
TGGGCAGTGGGGCCTTATGTGTGCAGACGGCCTGGGCATGCAGGAGGCCTCAGTGATCTGCAGAGAGCTC
GGCTGTGGCTCTGTGAAGTTTATGCCCCGGTATGTTTTGACACCTGAAGAGATGAGGCAACCTTGGCTAT
ATGATGCCCAGTGCCATGGCAATGAATCCACCTTCTTGGAGTGCCGTCTGGGGTCCTGGGGGACCATCAG
TGGCTGCAAATGCCAGTGTGTGGCTGTGATTACCTGCTCTGGTGGTACCACACTACAAATGGGGCTAGTT
GATGGTGGCAGTCCTTGTGCTGGGACTGCACAGGCCACTGGGGCTTCCAATTTTGCCCTGAGATGTGACT
TGCATGAGAAGGAGGCTGGCGTTGTCTGCAGACAGTTGGAATGTGGCACTGCTCTGCAATGGTCCAGAGC
CCACGATGGAACTAACGGGAACCAGGAGCAGAAGTACCTTACATGCCAGGGAACAGAGACCAACATTTTA
CAATGCCTGATCAATGTGAACGTCCTGGAGCAATGTGACCTTCTGACCTACACCCAGGTTGTATGCACAG
GTCACGTGGAAGCCCGGCTGCTAGGTGGTGTACACCCCTGTGAAGGACGCCTAGAGGTTCTTAGAGGACT
TACCTGGGGCACTGTCTGCCATGATGACCTGGACCTGCCCATGGCCCACGTGGTTTGTAGGGAGCTGGGG
TGTGGCACTGCTGTATCCATACTCGGGAGTTCCCACTTTGGCTATGGATCAGGGCCTTTGTGGACAGAGG
CCTTTCGCTGTATGGGCAACGAATCACTGCTGTTCCATTGTCTGAGGGAACCTGGACACCAGTGTGGCCA
TGATCAGGATGCTGCACTAATCTGCTCAGGGGAAAAGTTCCGACTGGTCAATGGCAGCAGCCGCTGTGAG
GGCCGCGTGGAGCTTTTGGTACAGGATGCCTGGCAACCCCTCTGTGCTGCCAACTGGGACTTAGCAGATG
CCACTGTGCTCTGCCACCAGCTCAACTGTGGCTATGCAGTGGCCACACCGCAAGGAGGCCACTTTGGAAA
TGTGGAAGGTCCCATCAGGACAGATGTGTTTCACTGTGTGGGAACAGAGCCCCACTTACTGAGCTGCCCA
ACAAGCACCTTAGGGGCCCAGGCATGCGCACTGGGGAATTCAGCCTCGGCTCTCTGCTCAGGTCTCCAGG
ATGCCCTTCGGCTGAGGGAGGGACAGAGTCACTGTGATGGCCGAGTGGAGGTCTTCCTGGATGGCACGTG
GGGTCGTGTGCTGGACAGTGCATGGGACCTGCGTGATGCTGCTGTGGTGTGCAGGCAGCTTGGGTGCGGA
GAGGCACAGCTAGCCTATGATGCGCCAGCACCAGGCCATAAGACCATTCCTGTGGGGCTGAGTCTGGTGC
ACTGCTTGGGCTCTGAGACCCACCTGACCCAGTGCAATGTATCTGCTTCTCTGCTGGTTCATGCAGGGAC
TTTGCGGGATGCAGGAGTGGTGTGCTCGGGGAGCTTGCACATACGGTTGGCAGCGGGTAAGAACCGCTGT
GCTGGGCGTGTTGAAGTATTCTATCAGGGCACATGGGGCACCGTATGTGATGATGCCTGGGACCTGCAGG
ATGCCCATGTGGTCTGCAGGCAGCTGGGCTGTGGTCATGCCCTCAGTGCCCCTAGGGCTGCCCACTTTGG
AGCAGGAACTGGGCGCATCTGGATGGATGAACTGGGCTGCATGGGTGAGGAGGCTGCTCTATGGGAGTGC
CAGTCAGGAGGCTGGGGCCAACAAGATTGTGGGCACAAGGAGGATGCAGGCGTCATCTGTTCAGAATTTA
TTGATGTGAGGTTGCAAGAACATAGTCAGCCATGCACAGGACGACTGGAAGTTTTCTACAATGGGACCTG
GGGTGGTGTCTGCCAGTCTCTGAATGCTGCCTCCCTGAGGGTTCTGTGTGAACACCTGGGCTGTGGGTCC
CAAGGGCAACTGCTGGCCAGGCCAAGGGGCTCGTCTACGATTGAGACTGTCTGGTTGAAGTCCATTCAGT
GCAGGGACAAGCATGACATGTCCTTATGGCAGTGCCCCTCAGAACCCTGGAACAGACATTCTTGTCTTAG
AGGCGAGGAAGCTTGGTTGGCATGTGCAGAAAAGACAGAAGTTTCTCAGGATATGGAGCAGATTGCCAAC
TGCTCATCAACTCTTAGCTGCCCAGAGGAAGGTGCACTTCGTGTACTTGGGGGTGAGAACGGCTGCTCTG
GACGAGTGGAGCTCTGGCATGGAGGTTCATGGGGCACAGTGTGTGACGATTCCTGGGATCTGGCCGATGC
AGAAGTTGTTTGCCGGCAGCTGGGCTGTGGCCCAGCCATAGCTGCCTTGCAGAATGCTGCCTTTGGCCCT
GGTTCAGGGCCTGTATGGCTGGATGAAGTGGGATGCCGAGGCAGTGAGCTGTCTCTGGGAGCCTGCCAGG
CAGAACCATGGGGATATGGAGACTGCTCCCACAAGGAGGATGCTGGTGTGCGCTGCCTAGGTATCCCTGG
AACCATGGCATCCGGCAATTCTTCAGCTCCTCCACCTGTTCCTGAGTTCTGGACCATGCCTGAGATTGCC
TGTCTGGTCCTTGGCTGCCTCTTGGGCATAGTCTTTCTGGTCCTGGCTGTTCAGTGGTGTCATAGCAGAG
CCATTGGCCTGGGTTCTGGAGCAGTGGCGGAGCTGCCCTCAGAGGTTGTCTATGAATGCATTGAAACAGT
CCCTATGGATGAGAAAGAGGAGCCAGCAGCATCCCAGAGTCCAGTGCAGGATGAGGATTATGATGATGCA
GAAGAGCCCAAGGACAGCCCGGGGGAAGATATGGAGGCTGGGCACCATTGA

Translation (996 aa):
MAFSFLRLWPLLLLTCWTLVPDLALENFVSFLGGDNKCEGQVRLRNGGQWGLMCADGLGMQEASVICREL
GCGSVKFMPRYVLTPEEMRQPWLYDAQCHGNESTFLECRLGSWGTISGCKCQCVAVITCSGGTTLQMGLV
DGGSPCAGTAQATGASNFALRCDLHEKEAGVVCRQLECGTALQWSRAHDGTNGNQEQKYLTCQGTETNIL
QCLINVNVLEQCDLLTYTQVVCTGHVEARLLGGVHPCEGRLEVLRGLTWGTVCHDDLDLPMAHVVCRELG
CGTAVSILGSSHFGYGSGPLWTEAFRCMGNESLLFHCLREPGHQCGHDQDAALICSGEKFRLVNGSSRCE
GRVELLVQDAWQPLCAANWDLADATVLCHQLNCGYAVATPQGGHFGNVEGPIRTDVFHCVGTEPHLLSCP
TSTLGAQACALGNSASALCSGLQDALRLREGQSHCDGRVEVFLDGTWGRVLDSAWDLRDAAVVCRQLGCG
EAQLAYDAPAPGHKTIPVGLSLVHCLGSETHLTQCNVSASLLVHAGTLRDAGVVCSGSLHIRLAAGKNRC
AGRVEVFYQGTWGTVCDDAWDLQDAHVVCRQLGCGHALSAPRAAHFGAGTGRIWMDELGCMGEEAALWEC
QSGGWGQQDCGHKEDAGVICSEFIDVRLQEHSQPCTGRLEVFYNGTWGGVCQSLNAASLRVLCEHLGCGS
QGQLLARPRGSSTIETVWLKSIQCRDKHDMSLWQCPSEPWNRHSCLRGEEAWLACAEKTEVSQDMEQIAN
CSSTLSCPEEGALRVLGGENGCSGRVELWHGGSWGTVCDDSWDLADAEVVCRQLGCGPAIAALQNAAFGP
GSGPVWLDEVGCRGSELSLGACQAEPWGYGDCSHKEDAGVRCLGIPGTMASGNSSAPPPVPEFWTMPEIA
CLVLGCLLGIVFLVLAVQWCHSRAIGLGSGAVAELPSEVVYECIETVPMDEKEEPAASQSPVQDEDYDDA
EEPKDSPGEDMEAGHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH