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Report for CCDS52316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52316.1 Public Mus musculus 7 Aamdc 23 108 98 CCDS HistoryNCBI Gene:66273Re-query CCDS DB by CCDS ID:52316.1Re-query CCDS DB by GeneID:66273See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000154853.7 ENSMUSP00000115672.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000154853.7Link to Ensembl Protein Viewer:ENSMUSP00000115672.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000154853Re-query CCDS DB by Protein ID:ENSMUSP00000115672
Original member Current member EBI ENSMUST00000178078.7 ENSMUSP00000137067.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178078.7Link to Ensembl Protein Viewer:ENSMUSP00000137067.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178078Re-query CCDS DB by Protein ID:ENSMUSP00000137067
Original member Current member NCBI NM_001177945.1 NP_001171416.1 Accepted alive Link to Nucleotide Sequence:NM_001177945.1Link to Protein Sequence:NP_001171416.1Re-query CCDS DB by Nucleotide ID:NM_001177945Re-query CCDS DB by Protein ID:NP_001171416Link to BLAST:NP_001171416.1

Chromosomal Locations for CCDS 52316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97550601 97550741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97558131 97558226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97565151 97565300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97575588 97575653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (453 nt):
ATGTATGTGAGGTTCCCTGAACTCCTCCCGACCCTCCTCCTCACCTCCCAAGTGCTGGGATCACAGATTT
CAGCTCAGTTACTTATGGCTTCCCCTAAAATTGCTTCCCTCTCTTGGGGACAAATGAAAGTGCAAGGCTC
TACCTTAACCTATAAGGATTGCAAAGTATGGCCAGGAGGCAGTCGGGCTTGGGACTGGAGAGAAACAGGA
ACCGAGCATTCTCCTGGAGTGCAGCCAGCAGATGTAAAGGAAGTTGCTGAGAAAGGGGTACAGACTCTTG
TGATTGGCAGAGGAATGAGTGAGGCCTTGAAGGTGCCTCCGTCGACTGTGGAGTACCTGGAGAAACAAGG
CATTGATGTGCGGGTCCTCCAGACAGAGCAGGCCGTGAAGGAGTATAATGCCTTGGTTGCCCAAGGGGTC
AGGGTAGGAGGTGTCTTCCATTCCACCTGCTGA

Translation (150 aa):
MYVRFPELLPTLLLTSQVLGSQISAQLLMASPKIASLSWGQMKVQGSTLTYKDCKVWPGGSRAWDWRETG
TEHSPGVQPADVKEVAEKGVQTLVIGRGMSEALKVPPSTVEYLEKQGIDVRVLQTEQAVKEYNALVAQGV
RVGGVFHSTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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