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Report for CCDS52270.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52270.1 Public Mus musculus 7 Ttc23 23 108 98 CCDS HistoryNCBI Gene:67009Re-query CCDS DB by CCDS ID:52270.1Re-query CCDS DB by GeneID:67009See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52270.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107470.1 ENSMUSP00000103094.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107470.1Link to Ensembl Protein Viewer:ENSMUSP00000103094.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107470Re-query CCDS DB by Protein ID:ENSMUSP00000103094
Original member Current member EBI ENSMUST00000107471.7 ENSMUSP00000103095.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107471.7Link to Ensembl Protein Viewer:ENSMUSP00000103095.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107471Re-query CCDS DB by Protein ID:ENSMUSP00000103095
Original member Current member NCBI NM_001168475.1 NP_001161947.1 Accepted alive Link to Nucleotide Sequence:NM_001168475.1Link to Protein Sequence:NP_001161947.1Re-query CCDS DB by Nucleotide ID:NM_001168475Re-query CCDS DB by Protein ID:NP_001161947Link to BLAST:NP_001161947.1
Original member Current member NCBI NM_001360653.1 NP_001347582.1 Accepted alive Link to Nucleotide Sequence:NM_001360653.1Link to Protein Sequence:NP_001347582.1Re-query CCDS DB by Nucleotide ID:NM_001360653Re-query CCDS DB by Protein ID:NP_001347582Link to BLAST:NP_001347582.1

Chromosomal Locations for CCDS 52270.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 67662347 67662526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67667163 67667286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67669698 67669848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67670052 67670177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67678894 67679071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67698224 67698329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67709324 67709451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67711354 67711503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67725234 67725316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67726028 67726142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGCAGGAGTCCCAGGACACCCACATGTCCAGCCACCTAGACGAAGTCGTTGCTGCTGTCAGCGTCACTT
CTAAAAACAGGATCCCGAATAAGCTGCTTCAGACAGCACTGTTCCAGCCCCCTCGAGAGAAACTCCACCT
GTGTGAGGAGAGAGCAAAGTCCTACTCCAGCAGCCGAGAGTACAAACAGGCCATCCAGGAGCTTGTGCGC
TGTGTGGCACTAACAAGAATTTGCTATGGCGACTGGCACTGGAAACTAGCGGAGGCGTATGTTAATCTGG
CTCAGGGTTACCTGCAGCTGAAAGGGTTGTCACTACAAGCAAAGCAGCATGCAGAGAAAGCCAAGGAGAT
CCTGGCCAACTCCATCGAGAGTCCCTGTCACAACAAAACAGATATCTTCAAGTGTTCCCTGGAGCTTTTC
TATACCCTGGGGAGAGCGCTGCTCTCCCTTCAAAAATTTAAAGACGCCTCAGAGAACTTGATAAAAGCAG
AGAGACTTTCCAAGGAGATGCTGCAATGTGGGAACATTGTAAAGGAAGAGTGGATAGAAATCCAGTCTCG
AATCAAGCTGTCGTTTGCACAGTTGTATCAAGGTCAGAAGAGATCAAAAGAAGCTTTCCCGTTCTATCAA
AAGGCTTTGGAATATACCGAGATCACCAAAGATGAAAAAAGTCTTGAGTGTGTACAAGTCCTGAGGGAAC
TGGCAGGTGTGGAGCAAGCCCTAGGACTCTACGCCGCCGCCATCAGTCATTTCTCACGGGCACATCTCAT
CATCCTGAGTAAAGATCCCTCCCCGGAGGAGGCTGCAGACTCTGCACACTTCATCGCCCGGGCTGCTGCT
GCTTCTGGGATGCACGACCACCGTGATGTGGCCGAGAAATACTTTCAGGAAAGCATGACTTCTATCAAGG
ATTCCGAAGGAGCGGAAAGAGCCAAGTTCCTTTCGATTCAAGATGAGTTTTGCAGTTTTCTGCAAACCAC
CGGACAAAAAGAAAGAGCGGCCATGATCCTGAGAGAGTCCCTGGAAGCCAAAGTAGGAGCATTTGGTGAC
TTCAGTCCTGAGGTGGCAGAAACGTACCGGGCCCTGGGCAGGGCAGACCTGGCGCAGGGAAACAACAGTG
GAGCGTACGCGAAGCTAAAGAAGTGTGTCCAGATTGAGACGTTCTTGTATGGATCACAGGACAAGAAGAC
CCTGGCCACCCAGCACACCATAGACACACTGTCCAAGATCTCCGAGGCTGCCGGGAAGTCAAGGCAATCG
GTGAAAGCCAAAGTAGCATTCTGCACCAGTGCCCCCCAGTACGGCATGCCAGGGAAGGGCAGGCACAGTG
TAGCAGACTGA

Translation (446 aa):
MQESQDTHMSSHLDEVVAAVSVTSKNRIPNKLLQTALFQPPREKLHLCEERAKSYSSSREYKQAIQELVR
CVALTRICYGDWHWKLAEAYVNLAQGYLQLKGLSLQAKQHAEKAKEILANSIESPCHNKTDIFKCSLELF
YTLGRALLSLQKFKDASENLIKAERLSKEMLQCGNIVKEEWIEIQSRIKLSFAQLYQGQKRSKEAFPFYQ
KALEYTEITKDEKSLECVQVLRELAGVEQALGLYAAAISHFSRAHLIILSKDPSPEEAADSAHFIARAAA
ASGMHDHRDVAEKYFQESMTSIKDSEGAERAKFLSIQDEFCSFLQTTGQKERAAMILRESLEAKVGAFGD
FSPEVAETYRALGRADLAQGNNSGAYAKLKKCVQIETFLYGSQDKKTLATQHTIDTLSKISEAAGKSRQS
VKAKVAFCTSAPQYGMPGKGRHSVAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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