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Report for CCDS52248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52248.1 Public Mus musculus 7 Plekha4 23 108 98 CCDS HistoryNCBI Gene:69217Re-query CCDS DB by CCDS ID:52248.1Re-query CCDS DB by GeneID:69217See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52248.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051810.14 ENSMUSP00000051468.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051810.14Link to Ensembl Protein Viewer:ENSMUSP00000051468.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000051810Re-query CCDS DB by Protein ID:ENSMUSP00000051468
Original member Current member EBI ENSMUST00000209517.1 ENSMUSP00000148229.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209517.1Link to Ensembl Protein Viewer:ENSMUSP00000148229.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209517Re-query CCDS DB by Protein ID:ENSMUSP00000148229
Original member Current member NCBI NM_148927.2 NP_683729.2 Accepted alive Link to Nucleotide Sequence:NM_148927.2Link to Protein Sequence:NP_683729.2Re-query CCDS DB by Nucleotide ID:NM_148927Re-query CCDS DB by Protein ID:NP_683729Link to BLAST:NP_683729.2

Chromosomal Locations for CCDS 52248.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45530575 45530658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45532258 45532365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45534338 45534410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45534507 45534607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45534744 45534853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45537657 45537872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45538198 45538477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45539206 45539289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45540480 45540527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45540831 45540911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45541055 45541204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45543946 45544044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45547950 45548090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45549060 45549159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45549230 45549306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45549804 45549965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45553245 45553294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45553569 45553681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45553765 45554027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2340 nt):
ATGGAGCAGGGCCGACCCCGGAGCAGCCTCAGCCTGGCCAGCAGTGCTTCCACCGTCTCCTCTCTGAGTA
GCCTGAGCACCAAGAAGCCTACCCGTGCAGTACACAAGGTCCATGCCTTTGGAAAAAGGAACAATGCACT
TCGACGAGACCCCAACTTGCCGGTGCACATCCGTGGCTGGCTGCACAAACAGGACAGCTCAGGCCTCCGG
CTGTGGAAGCGCCGTTGGTTCGTCCTTTCAGGCCATTGCCTCTTCTACTATAAGGATAGCAGAGAAGAGA
GTGTCCTGGGCAGTGTATTATTACCCAGCTACAGTGTCAGGCCAGATGGGCCCGGAGCCCCTCGTGGCCG
GCGATTCACCTTCACAGCAGAGCACCCGGGCATGAGGACCTATGTCCTTGCAGCTGACACATTAGAGGAC
CTGAGAGGTTGGCTTCGAGCACTGGGGAGGGCCTCTCGTGCGGAGGGGGAAGATTGCGGACTCCCGAGGT
CACCTGCACGTCCCAGGCCTGGGGAAGGTCCTGGGGGACCCGGAGGACCCCCAGAGGTGAACAGAAGGGA
AGAGGGGCGCATCTCAGAATCACCAGAGGTAGCTCGGCTCTCCAGAGGTCTTGGCAGACATGAAACGCAC
ACTCCCAACTCTACAGTGGATCTGCAGACTGACACCTGGAGTCGTAGAACCCGGAGCCCAGAGTTGTTCT
CACCCCTTTCCCGGCCTCCCTCCCCTCTGAGCCTTCCCCGTCCTCGCTCTGCCCCGGCCCGGCGACCCCC
TCTCTCAGCAGGAGACATCTCATTTCCTGCCCGACCGCATACTCCTTTGAGTCGCATCGATGTCCGACCT
CCTCTGGATTGGGGACCCCAAAGACAGACCCTCTCCCGACCTCCCATTCCACGCCGAGGACCTTCCTCTG
AAGCTGGCGGAGAACGGCCACCCAGGAGTCCCCAGCCCCGGACACCAGAGCAGAGAACGCAGTCTACCCA
GGCCACCTCTGGTTCGTCCACCTATCTCCAGCTGCCCCCAAGACCTCCTGGGACCCAGGCCTCCATGATT
TTGCTGCCAGGACCCCCTGTGGACTCAGCTTTGCATCAGAGCTTGGAGACAGATACGTTGTTGACTAAGC
TGTGTGGGCAGGACCGGCTCCTGAGGCAGCTACAGGAGGATCTGGACAAGAGGCAGGAGGAGAAGGAGCA
GCTGGAGGCAGCTTTGGAGCTGACCCGGCAGCAGCTGGGCCAAGCTACCAGGGAGGCTGCAGCTTCCGGG
AAGGCCTGGGGTCGCCAGCGCCTTCTGCAGGACCGGCTGGTGAACGTGAGGGCTGCTCTGTGTCACCTGG
CTCAGGAGCGAGAGCGAGTTTGGGACACATACAGCGGCCTGGAGCAGGACCTCGGCACCCTAAGAGAGAC
GCTCGAGTACCTGCTGCACCTCGGGTCTCCCCAGGACCGTGCGTGTGCTCAACAGCAGCTGTGGATGGTG
GAGGACACGCTGGCAGGTCTGGGTGGCCCCCAGAAACAGCCCCCACATACTGATCCCAAGTCTCCATCCC
CTGCACCCCAAGGAGAAGAGTCCTCAGAGAGGGAGAGCCTTTCAGAGTCACTGGAGCTCAGCTCCCCTCA
GTCCCCTGAGGTGGACTGGAGTCGTCCCTCAGGCGGTGACAGAGCCCTCAGCAGCCCTCAGTCAGGTGTT
GGGTCTCCAAGGGTCTCCCGGGCATCCAGCCCTGAATGTCGTCAACCCTCATCTCCACTGCTGAGAACTA
AGGCCCCGCTGGCGCGGCCTCGTATGAGCGCGCAGGAGCAGCTGGAGCGCATGCGTAGAAACCAAGCATG
CGGGCTCCCTCTTCCTCGCCCTACCTCCCCGAGGCTCCTGACCCTGGGGAGGACACTGTCCCCAGCTCCA
CGCCAGCCTGACATGGAACAGAGGCCTATTGTTGGAGCTGCGAAATGGCTCAGGAGTTCTGGGTCCTGGA
GTAGTCCCAGGCACTCTGCAACCTGCTCACCAGTACCTGGAGGCCACCGGGAGCGAGTGCTCAGCCTCTC
CCAGGCTCTAGCTACAGAGGCTTCCCAGTGGCACAGGCTGATGGCAGCCTCTCCAGGCAGAAATTTGGAT
ACCAGGGGAGACTGTCTCCAGCCAAGCCCACAGCCTCCCAGTGAAGAACTGCCCCAGGTCACCTCGTCCC
CAGCTCCTCACAAGGCTACTTCTGCTACCACAGGGTTCTCATGCCAAGGCAGCCGGAGAGGCCTGGCCCC
ATGGGAGGCCAGGTGGGACCCTGGGAAGGCCCCTCCAGCTCTGACCCAGGAAGAGGGGGCATGGCCCTTC
AGAGTCACTCTGCTGCAGTCCAGCTTTTGA

Translation (779 aa):
MEQGRPRSSLSLASSASTVSSLSSLSTKKPTRAVHKVHAFGKRNNALRRDPNLPVHIRGWLHKQDSSGLR
LWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYSVRPDGPGAPRGRRFTFTAEHPGMRTYVLAADTLED
LRGWLRALGRASRAEGEDCGLPRSPARPRPGEGPGGPGGPPEVNRREEGRISESPEVARLSRGLGRHETH
TPNSTVDLQTDTWSRRTRSPELFSPLSRPPSPLSLPRPRSAPARRPPLSAGDISFPARPHTPLSRIDVRP
PLDWGPQRQTLSRPPIPRRGPSSEAGGERPPRSPQPRTPEQRTQSTQATSGSSTYLQLPPRPPGTQASMI
LLPGPPVDSALHQSLETDTLLTKLCGQDRLLRQLQEDLDKRQEEKEQLEAALELTRQQLGQATREAAASG
KAWGRQRLLQDRLVNVRAALCHLAQERERVWDTYSGLEQDLGTLRETLEYLLHLGSPQDRACAQQQLWMV
EDTLAGLGGPQKQPPHTDPKSPSPAPQGEESSERESLSESLELSSPQSPEVDWSRPSGGDRALSSPQSGV
GSPRVSRASSPECRQPSSPLLRTKAPLARPRMSAQEQLERMRRNQACGLPLPRPTSPRLLTLGRTLSPAP
RQPDMEQRPIVGAAKWLRSSGSWSSPRHSATCSPVPGGHRERVLSLSQALATEASQWHRLMAASPGRNLD
TRGDCLQPSPQPPSEELPQVTSSPAPHKATSATTGFSCQGSRRGLAPWEARWDPGKAPPALTQEEGAWPF
RVTLLQSSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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