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Genome Displays Related Resources Gene HomoloGene MANE RefSeq
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Report for CCDS52229.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
52229.1 |
Public |
Mus musculus |
7 |
Shank1 |
23 |
108 |
98 |
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Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 52229.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000107938.7 |
ENSMUSP00000103571.1 |
Accepted |
alive |
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NCBI |
NM_001034115.1 |
NP_001029287.1 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001029287.1 |
2167 |
D3YZU1 |
2167 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 52229.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (6504 nt): ATGACCCACAGCCCCGCGACAAGCGAGGACGAGGAAAGACACAGTGCCAGCGAGTGTCCCGAGGGGGGCT CAGAATCGGACAGCTCCCCAGACGGGCCAGGAAGAGGCCCCCAGGGGACTCGGGGCCGAGGCAGCGGAGC ACCTGGTAACCTGGCCTCTACCCGAGGCCTCCAGGGACGCTCCATGTCTGTCCCTGACGACGCCCACTTC AGCATGATGGTTTTCAGGATTGGCATCCCTGACTTGCATCAGACGAAATGCCTACGCTTCAACCCAGATG CCACCATCTGGACAGCCAAACAGCAAGTACTCTGTGCCCTGAGCGAGAGTCTACAGGACGTGCTGAACTA TGGACTGTTCCAGCCAGCCACCTCAGGCCGGGATGCCAACTTCTTGGAGGAGGAGAGGCTTCTAAGAGAG TACCCTCAGTCCTTTGAGAAAGGGGTACCCTACCTGGAGTTCCGCTACAAGACCCGAGTCTACAAACAGA CCAACCTGGATGAGAAACAGCTGGCCAAGCTGCACACAAAGACTGGGTTGAAGAAGTTCCTGGAATATGT GCAGCTTGGGACGTCTGACAAGGTGGCAAGGCTGCTGGACAAGGGGCTGGACCCCAACTACCACGACTCA GATTCAGGAGAGACACCTTTGACCCTGGCGGCCCAGACTGAAGGCTCAGTAGAGGTGATTCGGACGCTGT GCCTGGGCGGGGCGCATATAGACTTCAGGGCCCGGGATGGCATGACAGCGCTTCACAAAGCTGCATGTGC CCGGCACTGCCTGGCGCTCACGGCACTTCTGGACCTTGGGGGCTCCCCCAACTACAAGGACCGACGAGGG CTGACCCCCCTGTTCCACACAGCTATGGTGGGGGGAGACCCCCGCTGCTGCGAGCTACTTCTGTACAACA GGGCCCAGCTGGGCATTGCAGATGAGAACGGCTGGCAGGAAATCCATCAGGCCTGCCAACGAGGGCACTC TCAGCACCTGGAACACCTGCTCTTCTATGGGGCTGAGCCTGGAGCCCAGAATGCCTCAGGAAACACGGCC CTGCACATCTGTGCTCTCTACAACAAGGAGACCTGTGCCAGGATCCTCCTTTATCGTGGAGCAAACAAGG ATGTGAAAAATAACAATGGACAGACACCCTTCCAGGTGGCTGTGATTGCTGGGAATTTTGAGCTGGGGGA ACTGATTCGTAACCATCGGGAACAGGATGTGGTACCTTTCCAGGAGTCCCCCAAGTATGCAGCCCGGCGT CGGGGACCCCCAGGCGCAGGGCTGACTGTACCCCCAGCGCTGCTGCGAGCTAACAGTGACACGAGCATGG CGCTGCCTGATTGGATGGTGTTTTCGGCCCCAGGGGCCTCATCCTCTGGGACCCCTGGCCCTACCTCAGG ATCCCAGGGCCAGTCACAGCCCTCGGCCCCCAGCACCAAACTCAGTAGTGGGACCCTCAGAAGTGCCAGC AGTCCCCGAGGAGCCCGGGCACGCTCCCCGTCCCGGGGGAGACATCCTGAAGACGCCAAGAGACAACCTC GAGGCCGGCCCAGCTCCAGCGGGACACCCCGAGATGGGCCGGCTGGGGGAACTGGGGGCTCAGGGGGCCC TGGGGGCTCCCTGGGCAGCAGAGGCAGACGTAGGAAGCTCTATTCAGCGGTACCCGGTCGCTCCTTCATG GCGGTGAAGTCCTACCAGGCGCAAGGCGAGGGGGAGATCTCTCTGAGTAAAGGCGAAAAGATCAAAGTGC TCAGCATCGGGGAAGGAGGCTTCTGGGAAGGCCAGGTCAAAGGTCGAGTTGGCTGGTTCCCTTCTGACTG CCTAGAAGAGGTGGCAAACCGTTCCCAGGAGGGAAGACAAGAAAGCCGAAGTGACAAGGCAAAGAGACTC TTCAGGCATTACACAGTGGGCTCCTATGACAGCTTCGATGCCCCAAGTCTGATCGATGGGATTGACTCAG GGAGTGATTACATCATCAAGGAGAAGACAGTCTTACTGCAGAAGAAGGACAGTGAGGGGTTCGGGTTCGT GCTCCGGGGGGCCAAGGCGCAGACCCCCATCGAGGAATTCACCCCCACCCCGGCCTTCCCGGCGCTGCAG TACCTCGAGTCTGTGGACGAGGGTGGCGTGGCATGGCGGGCTGGACTACGAATGGGAGACTTCCTCATCG AGGTGAACGGACAGAATGTAGTGAAGGTTGGCCACCGTCAGGTGGTCAACATGATCCGACAGGGAGGCAA CACACTGATGGTCAAGGTGGTGATGGTGACCAGACACCCAGACATGGATGAGGCTGTCCACAAGAAAGCA TCCCAGCAGGCTAAGCGGCTCCCGCCCCCAGCCATCTCCCTGCGTTCCAAGTCTATGACCTCAGAGCTGG AGGAAATGGTCTCCCCCTGGAAGAAGAAAATTGAATACGAACAACAGCCTGCAGCAGTGCCCAGCATGGA GAAAAAGCGGACTGTGTATCAGATGGCACTCAACAAACTGGATGAGATCTTGGCTGCAGCTCAGCAGACC ATCAGTGCAAGTGAGAGTCCTGGGCCTGGCGGCCTCGCATCCCTGGGCAAGCACCGACCCAAAGGATTCT TTGCCACTGAGTCGAGCTTTGATCCTCACCACCGCTCCCAGCCAAGTTATGACCGGCCTTCTTTCCTGCC TCCCGGACCTGGCCTTATGCTCCGGCAGAAATCTATCGGGGCTGCGGAAGATGACAGACCCTACCTAGCA CCCCCAGCCATGAAATTCAGTCGTAGCCTGTCAGTCCCGGGTTCAGAGGACATACCCCCACCACCCACTA CATCCCCACCAGAGCCGCCCTATAGCACACCTCCGGCCCCCTCCTCTTCCGGCCGCCTCACTCCCTCGCC TCGGGGAGGGCCCTTTAACCCTGGTTCCGGGGGTCCCCTTCCCGCCTCCTCACCTTCATCTTTCGATGGG CCATCTCCTCCTGACCCCCGTAGTGGGGGCCGAGAGAAGAGCCTATATCACAGTGGCGCCCTACCCCCTG CCCACCACCACCCACCTCATCACCACCATCATCACGCCCCACCTCCTCAGCCCCACCATCACCATGCGCA TCCTCCCCACCCACCGGAGATGGAGACAGGAGGTTCCCCCGACGATCCCCCACCTCGATTGGCTCTGGGA CCCCAGCCCAGCCTTCGAGGCTGGCGAGGTGGAGGACCCAGCCCGACCTCGGGGGCCCCATCACCTTCCC ACCACAGTAGCAGCGGAGGCAGTAGCGGTCCTGCTCAGGCTCCCGCCCTGCGCTACTTCCAGCTGCCCCC GAGGGCGGCCAGTGCGGCTATGTACGTACCAGCCCGCTCCGGCCGCGGTCGCAAAGGCCCGCTGGTCAAG CAGACCAAAGTGGAAGGCGAGCCCCAAAAGGGCAGCCTCCCTCCCGCGTCCTCTCCAACATCCCCGGCGT TGCCTCGGTCCGAACCACCTCCGGCCGGGCCGTCGGAGAAAAATTCCATCCCTATCCCTACCATCATCAT CAAAGCCCCATCTACCAGTAGCAGCGGCCGCAGTAGCCAGGGAAGCAGCACAGAGGCTGAGCCCCCCACC CAGCCCGACGGCGCGGGCGGCGGAGGATCCTCGCCTAGCCCTGCACCTGCCACGTCCCCTGTACCGCCGT CCCCGTCGCCCGTGCCCACCCCTGCGTCACCCAGCGGCCCGGCCACCCTGGATTTCACTAGCCAGTTTGG AGCAGCCCTAGTGGGCGCGGCGCGGAGGGAGGGAGGCTGGCAAAACGAAGCCCGGCGGCGGTCCACGCTA TTCCTGTCCACCGACGCAGGAGATGAGGATGGAGGCGACAGCGGGCTGGGCCCGGGGGCGCCCCCGGGTC CCCGGCTGCGCCATTCCAAATCCATTGATGAAGGCATGTTCTCCGCCGAGCCGTACCTCCGGCTGGAGTC GGGGGGCAGCAGCGGGGGCTACGGGGCATACGCAGCGGGCAGCCGAGCCTACGGGGGCAGCGGGAGCAGC AGCGCCTTCACCAGCTTCCTCCCCCCGCGGCCCCTGGTGCATCCGCTGACCGGCAAAGCCTTGGATCCCG CCTCTCCGCTGGGGCTGGCCTTGGCCGCCCGGGAGCGGGCCTTGAAGGAGTCCTCGGAGGGCGGGGTCAC CCCTCAGCCGCCCCCGAGACCTCCATCACCACGCTACGACGCCCCACCGCCCACCCTTCACCACCACTCG CCCCATTCACCCCATTCGCCACATGCGCGTCATGAGCCAGTGTTGCGCCTCTGGGGAGACCCGGCGCGCC GGGAGCTGGGGTACCGGGCAGGCCTAGGGAGTCAGGAGAAGGCCCTTACCGCTAGTCCACCTGCAGCTCG CCGCTCGCTACTGCACCGTCTTCCCCCGACGGCTCCCGGGGTCGGGCCGCTCCTGCTTCAACTGGGGCCG GAGCCCCCAACTCCCCATCCTGGGGTGAGCAAGGCCTGGCGCACAGCAGCCCCCGAGGAGCCAGAGCGGC TGCCTCTGCATGTGCGATTCCTTGAAAATTGCCAGGCCCGGCCTCCTCCAGCTGGCACGAGAGGGTCCTC CACTGAAGATGGGCCTGGGGTTCCGCCTCCCAGCCCTCGCAGAGTCTTGCCAACCTCTCCCACTTCCCCG CGAGGCAACGAGGAGAACGGCCTTCCGCTACTGGTCCTGCCACCGCCAGCCCCTTCGGTGGATGTGGACG ACGGCGAGTTCTTGTTTGCGGAGCCGCTGCCTCCACCCCTGGAGTTTTCCAATAGCTTCGAAAAGCCAGA GTCGCCTCTCACACCCGGGCCTCCCCACCCGCTGCCTGACCCTCCCTCCCCAGCTACCCCTCTACCCGCA GCCCCACCTCCGGCTGTGGCCGCCGCCCCTCCCACCTTGGACTCCACAGCATCCAGCCTGACCTCTTATG ACAGCGAAGTGGCCACGTTGACCCAGGGGGCTCCCGCGGCTCCTGGGGACCCTCCTGCTCCAGGCCCTCC GGCCCCGGCAGCTCCAGCTCCTCCAGCACCGCAGCCAGGCCCCGACCCTCCACCTGGCACAGATTCTGGA ATTGAGGAGGTGGACAGTCGGAGCAGCAGCGATCACCCGCTGGAGACCATCAGCAGTGCATCCACACTCA GCAGCTTGTCCGCCGAAGGAGGAGGCAACACAGGGGGCGTGGCTGGGGGCGGGGCCGGGGTGGCCAGCGG GACGGAGCTCCTGGACACCTACGTTGCCTACCTGGATGGCCAGGCCTTCGGGGGCAGTGGGACTCCTGGC CCACCATATCCCCCTCAGCTCATGACTCCTTCTAAGCTCCGGGGCAGGGCGCTTGGGACTAGTGGAAATT TGAGACCTGGTCCCAGTGGGGGACTTCGAGATCCTGTCACCCCCACCAGCCCCACCGTCTCTGTGACAGG AGCTGGAACAGATGGGCTACTGGCCTTGAGTGCTTGTTCTGGACCCTCAACGGCAGGTGTGGCAGGGGGT CCCGTGGCGGTTGAGCCAGAAGTCCCGCCTGTACCTTTGCCCACTGCCTCATCCCTGCCTCGGAAGCTAC TACCATGGGAGGAGGGTCCGGGACCACCACCACCACCCCTGCCAGGGCCCCTGTCCCAGCCTCAGGCCTC TGCCTTGGCCACGGTCAAAGCCAGCATCATCAGCGAACTCAGCTCCAAGCTCCAGCAGTTTGGTGGGGCC TCTACCGCGGGAGGAGCTCTGCCTTGGGCTCGGGGAGGCAGCGGGGGCAGCACAGACAGCCACCACGGAG GAGCCAGTTACATCCCAGAGAGGACCTCCTCCCTGCAGCGGCAGAGGCTCTCCGAAGACTCCCAGACCTC TCTCCTCTCCAAACCCAGCAGCAGCATCTTTCAGAACTGGCCTAAACCCCCTCTGCCACCACTCCCCACC GGATCTGGGGTCTCCTCTTCAACAGCTGCAGCCCCAGGAGCTACATCCCCTTCAGCCTCATCTGCCTCAG CTTCCACCAGACACCTGCAGGGTGTGGAATTTGAGATGCGGCCTCCGCTGCTCCGCCGGGCACCCAGCCC CTCGCTGCTGCCTGCCTCGGATCACAAGGTCAGCCCAGCGCCCAGGCCCTCTTCTTTGCCCATCCTGCCT TCAGGACCCCTCTACCCGGGCCTCTTCGACATCCGTAGCTCTCCGACCGGAGGGGCAGGAGGCTCGGCTG ACCCCTTCGCTCCCGTCTTTGTGCCACCACACCCCGGGATATCTGGGGGTCTTGGAGGAGCCTTGTCTGG GGCCTCTCGCTCCCTATCACCCACCCGCCTGCTCTCGCTGCCCCCGGACAAGCCGTTCGGCGCCAAGCCT CTAGGGTTCTGGACCAAGTTTGACGTCGCTGATTGGCTGGAGTGGCTGGGCTTATCAGAGCATCGAGCCC AGTTCCTGGACCACGAGATTGATGGCTCCCATCTGCCCGCCTTGACCAAGGAGGACTATGTGGACCTGGG CGTGACCAGGGTGGGCCACCGTATGAACATTGACCGGGCTCTCAAATTTTTCCTGGAGAGGTGA
Translation (2167 aa): MTHSPATSEDEERHSASECPEGGSESDSSPDGPGRGPQGTRGRGSGAPGNLASTRGLQGRSMSVPDDAHF SMMVFRIGIPDLHQTKCLRFNPDATIWTAKQQVLCALSESLQDVLNYGLFQPATSGRDANFLEEERLLRE YPQSFEKGVPYLEFRYKTRVYKQTNLDEKQLAKLHTKTGLKKFLEYVQLGTSDKVARLLDKGLDPNYHDS DSGETPLTLAAQTEGSVEVIRTLCLGGAHIDFRARDGMTALHKAACARHCLALTALLDLGGSPNYKDRRG LTPLFHTAMVGGDPRCCELLLYNRAQLGIADENGWQEIHQACQRGHSQHLEHLLFYGAEPGAQNASGNTA LHICALYNKETCARILLYRGANKDVKNNNGQTPFQVAVIAGNFELGELIRNHREQDVVPFQESPKYAARR RGPPGAGLTVPPALLRANSDTSMALPDWMVFSAPGASSSGTPGPTSGSQGQSQPSAPSTKLSSGTLRSAS SPRGARARSPSRGRHPEDAKRQPRGRPSSSGTPRDGPAGGTGGSGGPGGSLGSRGRRRKLYSAVPGRSFM AVKSYQAQGEGEISLSKGEKIKVLSIGEGGFWEGQVKGRVGWFPSDCLEEVANRSQEGRQESRSDKAKRL FRHYTVGSYDSFDAPSLIDGIDSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQ YLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEAVHKKA SQQAKRLPPPAISLRSKSMTSELEEMVSPWKKKIEYEQQPAAVPSMEKKRTVYQMALNKLDEILAAAQQT ISASESPGPGGLASLGKHRPKGFFATESSFDPHHRSQPSYDRPSFLPPGPGLMLRQKSIGAAEDDRPYLA PPAMKFSRSLSVPGSEDIPPPPTTSPPEPPYSTPPAPSSSGRLTPSPRGGPFNPGSGGPLPASSPSSFDG PSPPDPRSGGREKSLYHSGALPPAHHHPPHHHHHHAPPPQPHHHHAHPPHPPEMETGGSPDDPPPRLALG PQPSLRGWRGGGPSPTSGAPSPSHHSSSGGSSGPAQAPALRYFQLPPRAASAAMYVPARSGRGRKGPLVK QTKVEGEPQKGSLPPASSPTSPALPRSEPPPAGPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPT QPDGAGGGGSSPSPAPATSPVPPSPSPVPTPASPSGPATLDFTSQFGAALVGAARREGGWQNEARRRSTL FLSTDAGDEDGGDSGLGPGAPPGPRLRHSKSIDEGMFSAEPYLRLESGGSSGGYGAYAAGSRAYGGSGSS SAFTSFLPPRPLVHPLTGKALDPASPLGLALAARERALKESSEGGVTPQPPPRPPSPRYDAPPPTLHHHS PHSPHSPHARHEPVLRLWGDPARRELGYRAGLGSQEKALTASPPAARRSLLHRLPPTAPGVGPLLLQLGP EPPTPHPGVSKAWRTAAPEEPERLPLHVRFLENCQARPPPAGTRGSSTEDGPGVPPPSPRRVLPTSPTSP RGNEENGLPLLVLPPPAPSVDVDDGEFLFAEPLPPPLEFSNSFEKPESPLTPGPPHPLPDPPSPATPLPA APPPAVAAAPPTLDSTASSLTSYDSEVATLTQGAPAAPGDPPAPGPPAPAAPAPPAPQPGPDPPPGTDSG IEEVDSRSSSDHPLETISSASTLSSLSAEGGGNTGGVAGGGAGVASGTELLDTYVAYLDGQAFGGSGTPG PPYPPQLMTPSKLRGRALGTSGNLRPGPSGGLRDPVTPTSPTVSVTGAGTDGLLALSACSGPSTAGVAGG PVAVEPEVPPVPLPTASSLPRKLLPWEEGPGPPPPPLPGPLSQPQASALATVKASIISELSSKLQQFGGA STAGGALPWARGGSGGSTDSHHGGASYIPERTSSLQRQRLSEDSQTSLLSKPSSSIFQNWPKPPLPPLPT GSGVSSSTAAAPGATSPSASSASASTRHLQGVEFEMRPPLLRRAPSPSLLPASDHKVSPAPRPSSLPILP SGPLYPGLFDIRSSPTGGAGGSADPFAPVFVPPHPGISGGLGGALSGASRSLSPTRLLSLPPDKPFGAKP LGFWTKFDVADWLEWLGLSEHRAQFLDHEIDGSHLPALTKEDYVDLGVTRVGHRMNIDRALKFFLER
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