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Report for CCDS52146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52146.1 Public Mus musculus 7 Cic 23 108 98 CCDS HistoryNCBI Gene:71722Re-query CCDS DB by CCDS ID:52146.1Re-query CCDS DB by GeneID:71722See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52146.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163320.7 ENSMUSP00000126659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163320.7Link to Ensembl Protein Viewer:ENSMUSP00000126659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163320Re-query CCDS DB by Protein ID:ENSMUSP00000126659
Original member Current member NCBI NM_027882.4 NP_082158.2 Accepted alive Link to Nucleotide Sequence:NM_027882.4Link to Protein Sequence:NP_082158.2Re-query CCDS DB by Nucleotide ID:NM_027882Re-query CCDS DB by Protein ID:NP_082158Link to BLAST:NP_082158.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082158.2 1604 Q924A2-2 1604 100% 0 0

Chromosomal Locations for CCDS 52146.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25282850 25282916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25284849 25284998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25285079 25285313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25285410 25285539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25285634 25285816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25285898 25286063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25286807 25287009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25287101 25287326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25287750 25287853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25288074 25289301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25289388 25289575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25290571 25290692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25290799 25290965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25291055 25291342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25291450 25291769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25292064 25292314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25292414 25292568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25292650 25292781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25292956 25293087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25293168 25293535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4815 nt):
ATGTACTCGGCCCACAGGCCCCTGATACCCGCGTCTGGCGCGGCCTCTCGTGGCCTCGGCATGTTCGTGT
GGACAAATGTCGAACCTCGTTCTGTGGCTGTGTTCCCCTGGCACTCCTTAGTCCCCTTCCTGGCACCCAG
CCAGCCCGACCCCTCTGTGCAGCCTAGTGAGGCCCAGCAACCTGCCAGCCACCCTGTGGCCTCCAACCAG
AGCAAAGAACCTGCTGAGTCTGCTGCTGTTGCTCATGAGCAGCCACCAGGAGGGACGGGGGGTGCTGACC
CTGGACGGCCCCCTGGAGCAGTGTGCCCTGAGAGCCCAGGGCCTGGACCTCCACTTACTTTGGGTGGTGT
GGATCCTGGTAAAAGTCTCCCCCCCACCACTGAGGAGGAGGCTCCTGGCCCTCCAGGAGAGCCCCGGCTG
GACAGTGAGACCGAGAGTGATCATGATGATGCCTTCCTCTCCATCATGTCTCCTGAGATTCAGTTGCCTC
TGCCACCTGGAAAGCGCCGCACCCAGTCTCTGAGTGCCTTGCCCAAGGAACGAGACTCATCTTCTGAAAA
GGATGGACGAAGTCCTAACAAGCGGGAGAAGGACCATATTCGTCGGCCCATGAATGCCTTCATGATCTTC
AGCAAGCGGCACCGGGCCTTGGTCCACCAGCGGCACCCCAACCAGGACAACCGGACTGTCAGCAAGATCC
TGGGCGAGTGGTGGTACGCCCTGGGGCCCAAAGAGAAGCAGAAATACCACGACCTGGCCTTCCAGGTGAA
AGAGGCCCACTTCAAGGCCCACCCAGATTGGAAATGGTGCAACAAGGACCGAAAGAAGTCCAGCTCAGAG
GCCAAGCCTGCGAGCCTGGGTCTGGCAGGAGGGCACAAGGAGACGCGGGAACGGAGCATGTCGGAGACGG
GAACTGCTGCTGCCCCTGGGGTGTCTTCTGAGCTCCTGTCTGTTGCTGCCCAGACACTTTTGAGCTCGGA
CACCAAGGTTCCAGGGAGTGGCCCCTGTGGAGCAGAACGGCTACACGCAGTTGGGGCACCTGGCTCAGCC
CGACCCAGAGCCTTCTCCCACAGTGGGGTGCACAGTCTTGATGGTGGGGAAGTAGACAGCCAAGCACTTC
AAGAACTGACCCAGATGGTTTCTGGCCCCGCATCATACTCCGGCCCAAAGCCTTCCCCCCAGTATGGTGC
TCCAGGATCTTTTGCAGCTCCTGGTGAAGGAGGTACCTTGGCCACTAGTGGGCGGCCTCCACTGTTGCCC
TCCCGAGCCTCTCGTTCCCAGCGTGCAGCCAGTGAGGACATGACCAGTGATGAGGAGCGGATGGTCATCT
GTGAGGAAGAAGGGGATGATGATGTCATTGCTGATGACAGCTTTGGCACCACCGACATTGATCTCAAGTG
CAAGGAACGAGTGACTGACAGTGAAAGTGGAGACAGCTCTGGGGAGGACCCAGAGGGTAACAAGGGCTTT
GGCCGTAAGGTGTTCTCACCTGTCATCCGCTCCTCCTTTACCCATTGCCGTCCAACCCTGGACCCTGAGC
CTCCAGGGCCCCCGGATCCACCTGCAGCCTTCAGCAAAGGCTACGGTCCCACCCCATCATCCTCCTCTTC
ACCTGCTTCCACCTCAGTCTCAGTCTCCACCTCCTTTTCACTGGGCTCTGGAACCTTTAAGACCCAGGAG
TCTGGTCAGGGCAGCACAGCGGTGCCACTACGGCCCCCACCCCCTGGAGCCGGGGGCCCAGCAACACCTT
CCAAGGCCACTCGGTTTCCTCCTACGGATTCTGCCACCTTTCGGCGCAAGAGACCTGAAAGTGTTGGTAG
CCTTGAAGCACCAGGCCCCTCTGTCATTGCAGCACCTCCCAGTGGGGGAGGAAACCTTCTGCAGACACTG
GTTCTGCCTCCGAGCAAGGAGGATCGGGAGGGTACACGAGTGCCCTCAGCCCCAGCCCCACCACTGGCTT
ATGGGGCTCCCGCAGCCCCTCTGTGCCGCCCTGCTGCCACCATGGTCACCAATGTGGTACGGCCTGTCAG
CAGCACTCCTGTGCCCATTGCCTCTAAGCCCTTTCCCACCTCTGGTCGGGCTGAGGCATCTTCAAATGAC
ATAGCAGGTGCCAGGACTGAAATGGGCACAGGATCCCGGGTGCCTGGGGGCTCCCCAATGGGTGTCAGTT
TAGTGTATTCAGATAAGAAGTCAGCAGCAGCAGCCACCTCGCCAGCTCCACATTTGGTAGCTGGACCTTT
ATTGGGCACTGTGGGGAAGGCACCTGCTACTGTCACCAACTTGCTGGTAGGCACCCCAGGCTATGGGGCT
CCTGCATCGCCTGCTGTTCAGTTTATTGCCCAGGGAGCCCCAGGCAGTGCAACCCCTGCAGGCTCAGGAG
CAAGTACTGGGAGTGGCCCCAATGGGCCAGTACCCCTGGGCATCCTGCAGCCAGGTGCCCTAGGCAAGGC
TGGGGGAATCACACAGGTGCAGTACATCCTGCCCACACTGCCCCAGCAGCTTCAAGTGGCACCTGCCCCA
GCACCAGCCCCTGGGACCAAGGCAGCAGCTCCCAGTGGCCCTGCACCCACCACCAGCATCCGTTTCACCC
TCCCTCCGGGCACCTCGACCAACGGCAAGGTCCTGGCTGCCACTGCACCCACTGCTGGCATCCCTATCCT
GCAGTCCGTACCCTCAGCCCCACCCCCTAAAGCCCAGTCAGTTTCTCCTGTCCAGGCCACACCTTCAGGT
GGCTCAGCCCAGCTGCTGCCTGGGAAGGTGCTAGTCCCCCTGGCTGCCCCTAGCATGTCAGTTCGAGGTG
GAGGGGCTGGTCAGCCACTGCCCCTGGTTAGCTCGCCTTTCTCAGTACCTGTCCAAAATGGTGCCCAACA
ACCTAGCAAGATTATCCAGCTGACTCCTGTGCCTGTGAGCACACCTAGTGGCCTGGTACCACCCCTGAGC
CCAGCTACAATGCCGGGACCCACATCACAGCCTCAGAAGGTCCTGTTGCCCTCTTCCACAAGAATCACCT
ATGTACAGTCAGCAGGTGGGCACACTCTGCCTCTAGGCACCAGTTCTGCATGCAGTCAGACTGGAACAGT
GACCTCATATGGGCCCACCAGCTCTGTAGCTCTGGGCTTCACATCTTTGGGGCCCAGTGGTCCTGCCTTT
GTACAGCCTCTGCTCTCAGGCCAAGCTCCTTTGCTGGCTCCTGGCCAGGTGGGCGTGTCACCTGTGCCTA
GTCCCCAGTTGCCTCCTGCCTGTACAGCCTCTGGAGGTCCTGTCATAACAGCATTTTACCCTGGCAGCCC
TGCACCCACTTCAGCACCCCTGGGCCCACCTTCCCAAGCTCCGCCAAGCCTGGTCTACACTGTAGCCACC
AGTACCACTCCACCTGCTGCTACCATTCTGCCCAAGGGCCCACCAGCCTCTGCCACTGCCACTCCAGCCC
CTACTAGTCCTTTCCCTAGCGCCACAGGCTCCATGACCTACAGCTTAGTGGCTCCCAAAGCTCAGCGACC
CAGCCCAAAAGCTCCCCAGAAAGTAAAGGCAGCCATTGCCAGCATTCCTGTGGGGTCTTTTGAATCGGGT
ACTACTGGGCGGCCTGGATCTACACCCCGACAGTCTTCAGACTCTGGCGTAGCCAGAGAGCCTGCTGCCC
CAGAATCAGAACTTGAGGGGCAGCCCACACCCCCAGCTCCCCCACCCCCCACAGAGACCTGGCCTCCCAC
TGCCCGGAGCAGTCCCCCACCCCCCTTGCCTGCTGAGGAGCGACCTGGCACTAAAGGCCCTGAGACTGCC
AGCAAATTCCCCAGCTCATCTTCAGACTGGCGAGTTCCTGGGCTGGGCCTGGAGAGTCGTGGGGAGCCTC
CTACCCCTCCCAGCCCAGCTCCAGCCACAGGCCCCAGTGGAAGCAGCAGTGGCAGCAGCGAGGGCAGTAG
TGGGAGGGCAGCTGGGGACACACCCGAGCGCAAGGAAGTCACTAGTTCTGGCAAGAAGATGAAGGTGCGG
CCCCCACCCCTGAAGAAGACCTTTGACTCTGTGGACAACAGGGTCCTGTCAGAAGTGGACTTTGAAGAGC
GGTTTGCTGAGCTGCCGGAGTTTAGACCAGAGGAGGTGCTGCCCTCACCCACCCTGCAGTCTCTGGCCAC
CTCGCCTCGGGCTATCCTCGGCTCCTACCGAAAGAAGAGGAAGAATTCCACGGACCTAGACTCAGCACCT
GAAGATCCCACCTCACCCAAGCGCAAGATGAGGAGACGTTCGAGCTGCAGCTCAGAGCCCAACACCCCCA
AGAGTGCCAAGTGCGAGGGGGACATCTTCACCTTTGACCGCACAGGTACTGAGACAGAGGATGTGCTCGG
GGAGCTGGAGTATGAGAAGGTGCCCTACTCATCACTGCGGCGCACCCTGGACCAACGGCGGGCCCTGGTC
ATGCAGCTCTTCCAGGACCATGGCTTCTTCCCATCAGCCCAGGCCACAGCAGCCTTCCAGGCCCGCTACG
CAGACATCTTCCCATCCAAGGTGTGTCTGCAATTAAAGATCCGAGAGGTCCGCCAGAAGATCATGCAGGC
AGCCACTCCCACAGAGCAGCCCCCTGGGGCTGAAGCCCCCCTCCCTGGACCACCCCCTACTGGCATGGCT
GCTACTCCTGTCCCCACTCCCAGCCCTGCTGGGGGCCCTGACCCCACCTCTCCAGGCTCGGACTCTGGCA
CTGCCCAAGTTGCCCCGCCACTGCCTCCACCCCCAGAGCCTGGGCCTGGACAGCCTGGCTGGGAGGGGGC
TCCCCAGCCCTCACCACCTCCCTCTGGCCCTTCCACAGCTGCCACAGGCAGGTGA

Translation (1604 aa):
MYSAHRPLIPASGAASRGLGMFVWTNVEPRSVAVFPWHSLVPFLAPSQPDPSVQPSEAQQPASHPVASNQ
SKEPAESAAVAHEQPPGGTGGADPGRPPGAVCPESPGPGPPLTLGGVDPGKSLPPTTEEEAPGPPGEPRL
DSETESDHDDAFLSIMSPEIQLPLPPGKRRTQSLSALPKERDSSSEKDGRSPNKREKDHIRRPMNAFMIF
SKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRKKSSSE
AKPASLGLAGGHKETRERSMSETGTAAAPGVSSELLSVAAQTLLSSDTKVPGSGPCGAERLHAVGAPGSA
RPRAFSHSGVHSLDGGEVDSQALQELTQMVSGPASYSGPKPSPQYGAPGSFAAPGEGGTLATSGRPPLLP
SRASRSQRAASEDMTSDEERMVICEEEGDDDVIADDSFGTTDIDLKCKERVTDSESGDSSGEDPEGNKGF
GRKVFSPVIRSSFTHCRPTLDPEPPGPPDPPAAFSKGYGPTPSSSSSPASTSVSVSTSFSLGSGTFKTQE
SGQGSTAVPLRPPPPGAGGPATPSKATRFPPTDSATFRRKRPESVGSLEAPGPSVIAAPPSGGGNLLQTL
VLPPSKEDREGTRVPSAPAPPLAYGAPAAPLCRPAATMVTNVVRPVSSTPVPIASKPFPTSGRAEASSND
IAGARTEMGTGSRVPGGSPMGVSLVYSDKKSAAAATSPAPHLVAGPLLGTVGKAPATVTNLLVGTPGYGA
PASPAVQFIAQGAPGSATPAGSGASTGSGPNGPVPLGILQPGALGKAGGITQVQYILPTLPQQLQVAPAP
APAPGTKAAAPSGPAPTTSIRFTLPPGTSTNGKVLAATAPTAGIPILQSVPSAPPPKAQSVSPVQATPSG
GSAQLLPGKVLVPLAAPSMSVRGGGAGQPLPLVSSPFSVPVQNGAQQPSKIIQLTPVPVSTPSGLVPPLS
PATMPGPTSQPQKVLLPSSTRITYVQSAGGHTLPLGTSSACSQTGTVTSYGPTSSVALGFTSLGPSGPAF
VQPLLSGQAPLLAPGQVGVSPVPSPQLPPACTASGGPVITAFYPGSPAPTSAPLGPPSQAPPSLVYTVAT
STTPPAATILPKGPPASATATPAPTSPFPSATGSMTYSLVAPKAQRPSPKAPQKVKAAIASIPVGSFESG
TTGRPGSTPRQSSDSGVAREPAAPESELEGQPTPPAPPPPTETWPPTARSSPPPPLPAEERPGTKGPETA
SKFPSSSSDWRVPGLGLESRGEPPTPPSPAPATGPSGSSSGSSEGSSGRAAGDTPERKEVTSSGKKMKVR
PPPLKKTFDSVDNRVLSEVDFEERFAELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRKNSTDLDSAP
EDPTSPKRKMRRRSSCSSEPNTPKSAKCEGDIFTFDRTGTETEDVLGELEYEKVPYSSLRRTLDQRRALV
MQLFQDHGFFPSAQATAAFQARYADIFPSKVCLQLKIREVRQKIMQAATPTEQPPGAEAPLPGPPPTGMA
ATPVPTPSPAGGPDPTSPGSDSGTAQVAPPLPPPPEPGPGQPGWEGAPQPSPPPSGPSTAATGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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