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Report for CCDS52051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52051.1 Public Mus musculus 7 Sympk 23 108 98 CCDS HistoryNCBI Gene:68188Re-query CCDS DB by CCDS ID:52051.1Re-query CCDS DB by GeneID:68188See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023882.13 ENSMUSP00000023882.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023882.13Link to Ensembl Protein Viewer:ENSMUSP00000023882.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000023882Re-query CCDS DB by Protein ID:ENSMUSP00000023882
Original member NCBI NM_026605.2 NP_080881.2 Updated not alive Link to Nucleotide Sequence:NM_026605.2Link to Protein Sequence:NP_080881.2Re-query CCDS DB by Nucleotide ID:NM_026605Re-query CCDS DB by Protein ID:NP_080881
Current member NCBI NM_026605.3 NP_080881.2 Accepted alive Link to Nucleotide Sequence:NM_026605.3Link to Protein Sequence:NP_080881.2Re-query CCDS DB by Nucleotide ID:NM_026605Re-query CCDS DB by Protein ID:NP_080881Link to BLAST:NP_080881.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080881.2 1288 Q80X82 1288 100% 0 0

Chromosomal Locations for CCDS 52051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 19028883 19028987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19029115 19029180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19030543 19030596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19030679 19030752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19034407 19034533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19035826 19036075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19036662 19036832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19037860 19038099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19040090 19040244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19040542 19040692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19042578 19042782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19043425 19043575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19044935 19045170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19045632 19045713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19045848 19045961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19046755 19046902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19047450 19047610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19048449 19048557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19048840 19048940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19049380 19049470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19049938 19050039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19052367 19052554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19053270 19053446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19053547 19053642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19053915 19054298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 19054389 19054517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3867 nt):
ATGGCAAGCAGCAGCGGGGACAGTGTCACCCGCCGGAGTGTGGCATCACAGTTTTTCACACAAGAAGAAG
GGCCAAGCATCGATGGCATGACCACTTCTGAGAGGGTGGTAGATCTTCTGAACCAGGCTGCATTGATCAC
CAATGACTCCAAGATCACAGTGCTCAAACAGGTCCAAGAGCTGATCATCAACAAGGACCCCACCCTGCTT
GACAACTTCCTGGATGAGATCATCGCTTTCCAAGCAGACAAATCCATTGAAGTGCGCAAGTTTGTCATTG
GCTTCATTGAGGAGGCATGCAAGCGGGACATTGAGCTGCTGCTAAAACTGATCGCCAACCTCAACATGCT
ATTGCGGGATGAAAATGTGAACGTGGTTAAGAAGGCCATCCTCACCATGACCCAGCTCTACAAGGTGGCC
CTACAGTGGATGGTGAAGTCTCGAGTCATCAGTGATCTCCAGGAGGCCTGCTGGGACATGGTGTCCTCTA
TGGCTGGGGAAATCATCCTGCTTTTGGATTCTGACAACGATGGCATCCGTACACATGCCATCAAGTTTGT
GGAGGGCCTCATTGTCACCCTGTCACCCCGCATGGCTGACTCAGAGGTCCCACGACGCCAGGAGCATGAC
ATCAGTCTGGACCGCATTCCTCGAGATCACCCCTACATCCAGTACAATGTCCTATGGGAAGAAGGCAAGG
CAGCTGTGGAGCAGCTGCTGAAGTTCATGGTGCACCCCGCCATCTCCTCCATCAACCTGACCACAGCGCT
CGGCTCCCTTGCCAACATCGCCCGCCAGAGACCCATGTTCATGTCCGAGGTGATCCAGGCCTATGAGACT
CTGCATGCCAACCTGCCCCCAACGCTGGCCAAGTCCCAGGTGAGCAGTGTGCGGAAGAACCTTAAGCTGC
ACTTGCTCAGTGTGCTCAAGCACCCTGCCTCCTTGGAGTTCCAGGCCCAGATCACCACCCTGCTGGTGGA
TCTGGGCACGCCCCAGGCTGAGATCGCCCGAAACATGCCTAGCAGCAAGGACTCCCGCAAGCGGCCCCGG
GACGATACAGATTCCACGCTCAAGAAGATGAAGCTGGAGCCCAACTTGGGAGAAGACGATGAGGACAAAG
ACTTGGAGCCTGGCCCATCAGGGACGTCAAAGGCGTCAGCCCAGATCTCAGGCCAGTCAGACACGGACAT
CACTGCTGAGTTCTTGCAGCCTCTGCTGACACCTGACAATGTGGCCAATCTGGTCCTCATCAGCATGGTG
TACCTGCCTGAGACCATGCCTGCCTCCTTCCAAGCCATCTACACCCCTGTGGAGTCAGCAGGCACTGAAG
CCCAGATCAAGCACCTGGCTCGACTCATGGCCACACAGATGACAGCTGCAGGACTGGGTCCTGGTGTGGA
ACAGACGAAACAGTGCAAGGAGGAGCCCAAGGAGGAGAAGGTGGTAAAGCCGGAGAGCGTCCTGATCAAG
CGGCGCCTGTCGGTGCAGGGCCAGGCCATCTCTGTGGTAGGCTCTCAGAGCACCATGTCTCCCTTGGAGG
AGGAGGTACCCCAGGCCAAGAGGAGGCCAGAACCCATCATCCCTGTCACGCAGCCACGGCTGGCAGGCGC
AGGTGGGCGCAAGAAGATCTTCCGTCTGAGCGATGTGCTGAAGCCCCTGACAGATGCCCAGGTGGAAGCC
ATGAAGCTAGGAGCTGTGAAGCGGATCCTGAGGGCTGAGAAGGCTGTAGCCTGCAGTGGGGCAGCCCAGG
TGCGCATCAAGATCCTGGCCAGCCTCGTAACACAGTTCGACTCCGGATTCAAGGCAGAGGTGCTGTCCTT
TATCCTGGAAGATGTCCGGGCCCGTCTGGACCTGGCTTTTGCCTGGCTCTACCAGGAATATAATGCCTAC
CTGGCAGCAGGGACCTCAGGCACTCTGGACAAATATGAGGATTGCCTCATCTGCCTGCTCTCTGGACTAC
AAGAGAAACCAGACCAGAAAGATGGGATCTTTACCAAGGTGGTTTTGGAGGCCCCACTGATCACTGAGAG
TGCCTTGGAGGTGATACGGAAGTACTGTGAGGATGAGAGTCGTGCCTACCTGGGCATGTCGACACTTGGA
GACCTGATCTTCAAGCGCCCTTCTCGCCAGTTCCAGTATCTGCACGTTCTTCTTGACCTCAGCTCTCACG
AGAAGGACAGGGTGCGCTCCCAGGCCTTGCTCTTCATTAAGCGAATGTATGAGAAGGAGCAGCTTCGAGA
GTATGTGGAGAAATTTGCCCTCAACTACCTGCAGCTCCTGGTCCACCCCAACCCACCCTCGGTGCTGTTT
GGAGCCGACAAGGACACAGAGGTGGCCGCACCCTGGACAGAGGAAACAGTGAAGCAGTGTTTGTATCTGT
ATCTGGCTCTCCTGCCTCAGAACCACAAGCTGATCCATGAGCTGGCAGCCGTGTACACTGAAGCCATCGC
TGACATCAAGCGGACAGTGCTGAGGGTCATTGAGCAGCCGATCCGAGGGATGGGCATGAACTCTCCAGAG
CTGCTGCTGCTGGTAGAAAACTGTCCCAAGGGGGCAGAGACGCTGGTCACCCGCTGCCTGCACAGCCTCA
CCGACAAAGTGCCACCATCCCCAGAACTGGTGAAGCGGGTCCGAGACCTGTACCACAAACGGCTGCCTGA
TGTGCGCTTCCTCATCCCCGTGCTCAATGGGTTGGAGAAGAAAGAGGTGATCCAGGCGCTGCCCAAGCTC
ATCAAACTCAACCCCATTGTGGTGAAGGAAGTCTTCAACCGCCTGCTAGGCACTCAGCACGGTGAGGGGA
ACTCGGCCCTGTCCCCCCTGAATCCAGGAGAGCTGCTGATTGCATTGCACAATATTGACTCTGTGAAGTG
TGACATGAAGTCCATCATCAAAGCCACCAACCTGTGTTTTGCGGAGCGGAATGTGTACACGTCGGAAGTG
CTAGCTGTGGTGATGCAGCAGCTGATGGAGCAAAGCCCTCTGCCCATGCTGCTCATGCGGACCGTCATCC
AGTCCCTCACCATGTACCCCCGCCTGGGGGGCTTCGTCATGAACATCCTGGCCCGACTCATCATGAAGCA
GGTATGGAAGTACCCCAAGGTATGGGAGGGCTTCATCAAGTGCTGCCAGCGCACCAAGCCACAGAGTTTC
CAGGTCATCCTGCAGCTACCTCCACAGCAGCTTGGCGCAGTCTTTGACAAGTGCCCTGAGCTCCGGGAGC
CACTGTTGGCCCATGTGCGCTCCTTCACTCCCCACCAGCAAGCACACATCCCCAACTCCATCATGACCAT
CCTGGAGGCCACTGGAAAGCAGGAGCCCGAAGTCAAGGAAGCACCTTCAGGGCCCCTGGAAGAGGATGAC
CTGGAGCCCTTGGCTCTGGCTTTGGCCCCGGCTCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCCCGGCCC
CTGCCCCACGGCCCCCTCAGGACCTCATCGGCCTGCGATTGGCTCAGGAGAAGGCCCTGAAGAGGCAGCT
GGAGGAGGAACAGAAGCAGAAGCCCACAGGCATCGGAGCGCCCGCTGCCTGTGTGTCCTCAACGCCCTCG
GTGCCAGCAGCAGCCCGAGCTGGGCCCACCCCAGCTGAGGAGGTCATGGAATACCGGGAGGAGGGTCCCG
AATGCGAGACCCCGGCCATCTTCATCAGCATGGACGACGACTCGGGGCTGGCTGAAACCACACTGCTGGA
CTCTAGTCTCGAGGGGCCCCTGCCTAAGGAGGCAGCAGCAGTCGGGTCGAGCTCCAAGGATGAGCGGAGC
CCCCAGAACCTCAGCCATGCTGTGGAAGAAGCCTTGAAGACCTCCAGCCCAGAAACCAGGGAACCCGAGA
GCAAGGGGAACAGCTGA

Translation (1288 aa):
MASSSGDSVTRRSVASQFFTQEEGPSIDGMTTSERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLL
DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVA
LQWMVKSRVISDLQEACWDMVSSMAGEIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEVPRRQEHD
ISLDRIPRDHPYIQYNVLWEEGKAAVEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYET
LHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDSRKRPR
DDTDSTLKKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMV
YLPETMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQCKEEPKEEKVVKPESVLIK
RRLSVQGQAISVVGSQSTMSPLEEEVPQAKRRPEPIIPVTQPRLAGAGGRKKIFRLSDVLKPLTDAQVEA
MKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFDSGFKAEVLSFILEDVRARLDLAFAWLYQEYNAY
LAAGTSGTLDKYEDCLICLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRAYLGMSTLG
DLIFKRPSRQFQYLHVLLDLSSHEKDRVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLF
GADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPE
LLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKL
IKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEV
LAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILARLIMKQVWKYPKVWEGFIKCCQRTKPQSF
QVILQLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQAHIPNSIMTILEATGKQEPEVKEAPSGPLEEDD
LEPLALALAPAPAPAPAPAPAPAPAPRPPQDLIGLRLAQEKALKRQLEEEQKQKPTGIGAPAACVSSTPS
VPAAARAGPTPAEEVMEYREEGPECETPAIFISMDDDSGLAETTLLDSSLEGPLPKEAAAVGSSSKDERS
PQNLSHAVEEALKTSSPETREPESKGNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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