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Report for CCDS51880.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51880.1 Public Mus musculus 6 Ift122 23 108 98 CCDS HistoryNCBI Gene:81896Re-query CCDS DB by CCDS ID:51880.1Re-query CCDS DB by GeneID:81896See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51880.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112925.7 ENSMUSP00000108547.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112925.7Link to Ensembl Protein Viewer:ENSMUSP00000108547.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112925Re-query CCDS DB by Protein ID:ENSMUSP00000108547
Original member Current member NCBI NM_001167763.1 NP_001161235.1 Accepted alive Link to Nucleotide Sequence:NM_001167763.1Link to Protein Sequence:NP_001161235.1Re-query CCDS DB by Nucleotide ID:NM_001167763Re-query CCDS DB by Protein ID:NP_001161235Link to BLAST:NP_001161235.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161235.1 1182 Q6NWV3-1 1182 100% 0 0

Chromosomal Locations for CCDS 51880.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 115853669 115853709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115862715 115862781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115864365 115864449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115875244 115875322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115877475 115877551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115880644 115880710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115881477 115881623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115884336 115884411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115886909 115887100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115887227 115887365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115888721 115888923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115890464 115890601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115891865 115892029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115894222 115894419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115899479 115899619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115902858 115902911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115905795 115905956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115910225 115910391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115912431 115912602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115913872 115913974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115915907 115916047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115916973 115917067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115920351 115920451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115923266 115923431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115923876 115923987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115924347 115924472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115925416 115925495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115925753 115925917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 115926236 115926325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3549 nt):
ATGAGGGCCGTGTTGACGTGGAGAGACAAAGCGGAGCAGTGTATCTACGACCTCGCATTTAAGCCTGATG
GAACACAACTGATTCTGGCTGCAGGAAACAGATTGCTGGTTTATGACACCTCTGATGGCACCTTACTTCA
GCCCCTGAAGGGACACAAAGACACCGTGTACTGTGTGGCGTATGCAAAGGATGGCAAGCGCTTTGCATCT
GGATCTGCTGACAAGAGCATCATTATCTGGACCTCAAAACTTGAAGGCATTCTGAAGTACACGCACAACG
ACTCTATACAGTGTGTCTCCTACAATCCTGTTACCCACCAGCTGGCATCTTGTTCCTCCAGTGACTTTGG
GTTATGGTCTCCTGAGCAGAAGTCTGTGTCCAAGCACAAATCCAGCAGCAAGATCACGTGCTGCAGCTGG
ACAAACGATGGTCAGTACCTGGCTCTGGGCATGGCCAATGGCATCATCAGTATACGGAACAAGAATGGTG
AAGAGAAAGTGAAGATCGAGCGCCCTGGGGGCTCCCTCTCCCCAATATGGTCCATCTGCTGGAACCCTTC
AAGAGAGGAACATAATGACATCCTGGCTGTAGCTGACTGGGGACAGAAACTTTCCTTCTACCAGCTGAGT
GGAAAACAGATTGGGAAGGATCGGCCACTGAACTTTGACCCCTGTTGCATCAGCTACTTCACTAAAGGAG
AGTACATTTTGGTGGGAGGTTCAGACAAGCAGGTATCTCTTTTCACCAAGGATGGAGTGCGACTGGGGAC
CGTTGGGGAGCAGAACTCCTGGGTGTGGACCTGTAGAGTGAAACCTGACTCCAATTATGTGGTGGTCGGC
TGCCAGGATGGCACCATCTCCTTCTACCAGCTCATCTTCAGCACAGTCCATGGGCTCTACAAAGATCGGT
ATGCCTACAGGGACAGCATGACAGACGTCATCGTGCAGCACCTCATCACAGAGCAGAAAGTTAGGATTAA
GTGCAGAGAGCTTGTCAAGAAAATTGCCATCTACAAAAATCGATTAGCTATCCAGCTGCCAGAGAAGATC
CTCATCTACGAGCTGTACTCTGAAGACTCGACAGACATGCACTACCGGGTAAAGGAGAAAATTGTCAAGA
AGTTTGAGTGCAACCTGCTGGTGGTGTGTGCTGACCACATCATCCTGTGCCAGGAGAAACGGCTACAGTG
CCTGTCCTTCAGTGGAGTGAAGGAAAGGGAATGGCAGATGGAATCTCTCATCCGCTACATCAAGGTGATC
GGTGGCCCTGCTGGAAGAGAAGGTCTGTTGGTAGGCCTGAAAAACGGCCAGATCCTGAAGATCTTTGTGG
ACAATCTTTTTGCTATTGTCCTGCTGAAGCAGGCCACAGCCGTGCGCTGCCTGGACATGAGTGCCTCCCG
GAACAAGCTGGCTGTGGTGGATGAGAATGACACGTGCCTGGTGTACGACATCCACACGAAGGAACTGCTT
TTCCAGGAACCGAATGCTAACAGCGTGGCCTGGAACACGCAGTGTGAGGACATGCTCTGCTTCTCTGGAG
GAGGCTACCTCAACATCAAGGCCAGCACCTTCCCAGTGCACCAGCAGAAGCTGCAGGGCTTTGTGGTTGG
CTACAACGGCTCCAAGATCTTCTGCCTTCATGTCTTCTCTATGTCTGCCGTGGAGGTGCCACAGTCCGCT
CCAATGTACCAGTACCTCGATAGGAAGATGTTCAAAGAAGCATATCAGATCGCTTGCTTGGGAGTGACAG
ACGCTGATTGGCGTGAACTGGCCATGGAAGCTCTAGAAGGACTAGAGTTTGAGACGGCAAGGAAGGCCTT
CACCAGAGTCCAGGACCTTCGATACCTAGAACTGATCAGCAGTATTGAGGAGAGGAAGAAGAGGGGAGAG
ACCAACAATGACCTGTTTCTGGCAGATGTGTTTTCCTACCAGGGGAAGTTTCATGAAGCCGCCAAACTAT
ACAAGAGGAGCGGGCATGAGAACCTCGCTCTCGACATGTATACTGACCTCTGCATGTTTGAGTACGCCAA
GGATTTCCTTGGATCTGGAGACCCTAAAGAAACGAAGATGCTCATCACCAAGCAGGCCGACTGGGCCAGA
AACATCAATGAGCCCAAAGCTGCAGTGGAGATGTACATCTCAGCAGGGGAGCACGCCAAGGCCATAGAGA
TCAGCGGCAGCCATGGCTGGGTGGACATGTTGATAGACATTGCTCGGAAGCTGGACAAGGCTGAACGGGA
GCCCCTGCTCATGTGTGCTTGCTACTTTAAGAAGCTGGACAGTCCTGGCTATGCTGCTGAGACCTACCTG
AAGATCGGGGACCTGAAGTCTCTGGTGCAGCTGTATGTGGACACCAAGCGCTGGGATGAGGCCTTTGCGT
TAGGTGAGAAGCACCCGGAGTTCAAGGATGACGTCTACGTGCCCTACGCGCAGTGGCTGGCGGAGAACGA
CCGCTTTGAGGAAGCCCAGAAAGCCTTCCACAAGGCCGGGAGGCAGGGAGAAGCAGTCCGGGTGCTGGAG
CAGCTCACGCACAATGCTGTGGTGGAGAGCAGGTTTAACGACGCTGCCTATTATTACTGGATGCTGTCCA
TGCAGTGCCTCGACATGGCTCAAGATCCTGCCCAGAAGGACGCGATGCTGGACAAGTTTCACCACTTCCA
ACACCTGGCTGAGCTGTACCATGGCTATCAAACCATTCACCGATACACGGAGGAGCCATTCAGCTTTGAC
CTCCCTGAAACCCTCTTCAACATCTCCAAGTTCTTGCTGCACAGCCTGACCAAGGCCACCCCCTTGGGTA
TCTCCAAAGTGAATACACTCTTCACACTGGCTAAGCAGAGCAAGGCTCTGGGTGCTTACAAGCTGGCCCG
GCATGCCTATGACAAGCTACGGGGGCTGCAGATCCCCGCCAGGATCCAGAAGTCCATTGAGCTGGGCACC
CTGACCATCCGCTCCAAGCCCTTCCATGACAGTGAGGAGCTGGTACCCTTGTGCTACCGCTGTTCTACCA
ACAACCCGCTGCTGAACAACCTTGGCAACGTCTGCATCAACTGCCGCCAGCCCTTCATCTTCTCCGCCTC
TTCCTATGAGGTGCTGCACCTGGTGGAATTCTACCTGGAAGAGGGGATCACTGACGAAGAAGCTGTTGCC
CTCATCGATCTGGAGGCACCAAGACACAAGAGGGAGGGCAAGTGGCGAGAGACCTCAAGCAACAATTCCC
AGACGTTGAAGCTGGACGAGACCATGGACTCCATAGGAGAAGATGACCCATTTACAGCCAAGCTGAGCTT
TGAGCAAGGTAGCTCTGAGTTTGTGCCTGTGGTGGTGAACCGGTCAGTACTACGCTCCATGAGCCGAAGA
GATGTTCTCATCAAGCGCTGGCCCCCGCCGCTGCAATGGCAATATTTCCGCTCGCTGTTGCCTGATGCCT
CCATCACCATGTGCCCCTCCTGCTTTCAGATGTTCCATTCAGAGGACTACGAACTGCTTGTGCTCCAGCA
CGCCTGCTGCCCTTACTGCCGAAGGCGTATCGACGACACTGGCCCGTGA

Translation (1182 aa):
MRAVLTWRDKAEQCIYDLAFKPDGTQLILAAGNRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFAS
GSADKSIIIWTSKLEGILKYTHNDSIQCVSYNPVTHQLASCSSSDFGLWSPEQKSVSKHKSSSKITCCSW
TNDGQYLALGMANGIISIRNKNGEEKVKIERPGGSLSPIWSICWNPSREEHNDILAVADWGQKLSFYQLS
GKQIGKDRPLNFDPCCISYFTKGEYILVGGSDKQVSLFTKDGVRLGTVGEQNSWVWTCRVKPDSNYVVVG
CQDGTISFYQLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCRELVKKIAIYKNRLAIQLPEKI
LIYELYSEDSTDMHYRVKEKIVKKFECNLLVVCADHIILCQEKRLQCLSFSGVKEREWQMESLIRYIKVI
GGPAGREGLLVGLKNGQILKIFVDNLFAIVLLKQATAVRCLDMSASRNKLAVVDENDTCLVYDIHTKELL
FQEPNANSVAWNTQCEDMLCFSGGGYLNIKASTFPVHQQKLQGFVVGYNGSKIFCLHVFSMSAVEVPQSA
PMYQYLDRKMFKEAYQIACLGVTDADWRELAMEALEGLEFETARKAFTRVQDLRYLELISSIEERKKRGE
TNNDLFLADVFSYQGKFHEAAKLYKRSGHENLALDMYTDLCMFEYAKDFLGSGDPKETKMLITKQADWAR
NINEPKAAVEMYISAGEHAKAIEISGSHGWVDMLIDIARKLDKAEREPLLMCACYFKKLDSPGYAAETYL
KIGDLKSLVQLYVDTKRWDEAFALGEKHPEFKDDVYVPYAQWLAENDRFEEAQKAFHKAGRQGEAVRVLE
QLTHNAVVESRFNDAAYYYWMLSMQCLDMAQDPAQKDAMLDKFHHFQHLAELYHGYQTIHRYTEEPFSFD
LPETLFNISKFLLHSLTKATPLGISKVNTLFTLAKQSKALGAYKLARHAYDKLRGLQIPARIQKSIELGT
LTIRSKPFHDSEELVPLCYRCSTNNPLLNNLGNVCINCRQPFIFSASSYEVLHLVEFYLEEGITDEEAVA
LIDLEAPRHKREGKWRETSSNNSQTLKLDETMDSIGEDDPFTAKLSFEQGSSEFVPVVVNRSVLRSMSRR
DVLIKRWPPPLQWQYFRSLLPDASITMCPSCFQMFHSEDYELLVLQHACCPYCRRRIDDTGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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