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Report for CCDS51822.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51822.1 Public Mus musculus 6 Actg2 23 108 98 CCDS HistoryNCBI Gene:11468Re-query CCDS DB by CCDS ID:51822.1Re-query CCDS DB by GeneID:11468See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51822.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075161.11 ENSMUSP00000074658.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075161.11Link to Ensembl Protein Viewer:ENSMUSP00000074658.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075161Re-query CCDS DB by Protein ID:ENSMUSP00000074658
Original member Current member EBI ENSMUST00000121731.7 ENSMUSP00000113552.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121731.7Link to Ensembl Protein Viewer:ENSMUSP00000113552.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121731Re-query CCDS DB by Protein ID:ENSMUSP00000113552
Original member Current member NCBI NM_009610.2 NP_033740.2 Accepted alive Link to Nucleotide Sequence:NM_009610.2Link to Protein Sequence:NP_033740.2Re-query CCDS DB by Nucleotide ID:NM_009610Re-query CCDS DB by Protein ID:NP_033740Link to BLAST:NP_033740.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033740.2 376 P63268 376 100% 0 0

Chromosomal Locations for CCDS 51822.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83512985 83513128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83516268 83516449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83519768 83519959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83520656 83520817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83522816 83522900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83523168 83523278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83526806 83526934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83527316 83527441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGTGTGAAGAAGAGACCACCGCCCTTGTGTGTGACAATGGCTCTGGCCTGTGCAAGGCAGGCTTTGCAG
GAGATGATGCCCCCAGGGCTGTCTTCCCCTCCATTGTGGGCCGCCCTAGACATCAGGGTGTGATGGTGGG
AATGGGCCAGAAAGACAGCTATGTGGGGGACGAGGCTCAGAGCAAGCGTGGGATCCTAACTCTCAAGTAC
CCTATTGAACATGGCATCATCACCAACTGGGATGACATGGAGAAGATCTGGCACCACTCCTTCTACAATG
AGCTTCGAGTAGCACCAGAAGAGCACCCCACCCTGCTCACAGAGGCCCCCCTAAACCCCAAAGCAAACAG
AGAGAAGATGACCCAGATCATGTTCGAAACCTTCAATGTCCCTGCCATGTATGTTGCTATTCAGGCTGTG
CTCTCACTCTATGCATCCGGCCGTACCACAGGCATCGTTCTGGATTCGGGGGATGGCGTCACCCACAATG
TCCCCATCTATGAGGGCTATGCACTGCCCCATGCCATCATGCGTCTTGACCTGGCTGGACGGGATCTCAC
AGACTACCTCATGAAGATTCTCACAGAAAGAGGCTATTCCTTTGTGACCACAGCTGAGAGAGAAATTGTA
CGAGACATCAAGGAGAAGCTGTGCTATGTAGCCCTGGATTTCGAGAATGAGATGGCCACAGCAGCTTCAT
CTTCTTCCCTGGAGAAAAGCTACGAGTTGCCTGATGGGCAGGTCATCACTATTGGCAACGAGCGCTTCCG
CTGCCCGGAGACCCTCTTCCAGCCTTCCTTCATTGGCATGGAGTCAGCTGGAATTCATGAAACAACATAC
AATTCCATCATGAAGTGTGACATTGACATCCGCAAAGATTTGTATGCTAACAATGTCCTCTCTGGGGGCA
CTACCATGTACCCTGGCATTGCTGACAGGATGCAGAAGGAAATCACAGCCTTGGCTCCCAGCACCATGAA
GATCAAGATTATCGCTCCTCCTGAGCGGAAGTACTCAGTCTGGATTGGCGGCTCCATCCTGGCCTCTCTC
TCCACCTTCCAGCAAATGTGGATCAGCAAGCCAGAGTATGATGAGGCAGGGCCCTCCATTGTCCACAGGA
AATGCTTCTAA

Translation (376 aa):
MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKY
PIEHGIITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAV
LSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIV
RDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTY
NSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKPEYDEAGPSIVHRKCF


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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