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Report for CCDS51808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51808.1 Public Mus musculus 6 0610030E20Rik 23 108 98 CCDS HistoryNCBI Gene:68364Re-query CCDS DB by CCDS ID:51808.1Re-query CCDS DB by GeneID:68364See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51808.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077783.4 ENSMUSP00000076957.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077783.4Link to Ensembl Protein Viewer:ENSMUSP00000076957.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077783Re-query CCDS DB by Protein ID:ENSMUSP00000076957
Original member Current member NCBI NM_026696.1 NP_080972.1 Accepted alive Link to Nucleotide Sequence:NM_026696.1Link to Protein Sequence:NP_080972.1Re-query CCDS DB by Nucleotide ID:NM_026696Re-query CCDS DB by Protein ID:NP_080972Link to BLAST:NP_080972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080972.1 166 Q149G0 166 100% 0 0

Chromosomal Locations for CCDS 51808.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 72347409 72347515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72347593 72347711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72348529 72348680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 72348997 72349119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGAGGCGGCCCAGGATCACGGGCCGGGGTTGTGCTGCAAGCCCGGCGGGCGTCTGGACATGAGCCACG
GCTTCGTACACCACATCCGTCGGAACCAGCTCGATCGGGACGACTACGACAAGAAGGTGAAGCAGGCGGC
CAAGGAGAAGGCGAGGAGGCGCCACACGCCCGCGCCCACGCGGCCCCGCAAGCCAGACCTACAAGTGTAC
CTGCCGCGCCACCGAGATGGCTCCACCCACCCCGTGAACCCAGACTGTGAGGAAGCCAGTGAAAGCAGCA
GTAGTGGAAGCTCCGAGCTAGAGCCTCCTGGCCGCCAGCTCTTCTGTTTAGACTATGAGGCGGACAGTGG
CGAGGTCACTTCAGTTATTGTCTATCAGGACGATGATCCTGGAAGGGTGAGTGAGGCAGTATCAGCACAC
ACACCTCTGGATCCAGCCATGCGGGAGGCCCTCAGATCGCGAATCCAGGAGGAACTTGCAAAACGCCAGA
GCCGGCACTGA

Translation (166 aa):
MEAAQDHGPGLCCKPGGRLDMSHGFVHHIRRNQLDRDDYDKKVKQAAKEKARRRHTPAPTRPRKPDLQVY
LPRHRDGSTHPVNPDCEEASESSSSGSSELEPPGRQLFCLDYEADSGEVTSVIVYQDDDPGRVSEAVSAH
TPLDPAMREALRSRIQEELAKRQSRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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