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Report for CCDS5178.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5178.1 Public Homo sapiens 6 MAP7 24 110 108 CCDS HistoryNCBI Gene:9053Re-query CCDS DB by CCDS ID:5178.1Re-query CCDS DB by GeneID:9053See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5178.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354570.8 ENSP00000346581.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354570.8Link to Ensembl Protein Viewer:ENSP00000346581.2Re-query CCDS DB by Nucleotide ID:ENST00000354570Re-query CCDS DB by Protein ID:ENSP00000346581
Original member Current member NCBI NM_003980.6 NP_003971.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003980.6Link to Protein Sequence:NP_003971.1Re-query CCDS DB by Nucleotide ID:NM_003980Re-query CCDS DB by Protein ID:NP_003971Link to BLAST:NP_003971.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003971.1 749 Q14244-1 749 100% 0 0

Chromosomal Locations for CCDS 5178.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 136344228 136344238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136345856 136346079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136356692 136356794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136359820 136359877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136359981 136360031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136360697 136360798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136361005 136361179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136362450 136362702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136365735 136366018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136366327 136366439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136372501 136372625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136377755 136377868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136383671 136383781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136388393 136388510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136389354 136389517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136411620 136411697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136421701 136421799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 136550342 136550408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGGCGGAGCTAGGAGCTGGCGGCGACGGCCACAGGGGCGGCGACGGCGCAGTGCGAAGCGAAACAGCAC
CCGACAGCTACAAAGTGCAAGATAAGAAAAATGCCTCCAGCCGCCCTGCCTCTGCAATTTCAGGACAAAA
TAACAACCACTCAGGAAATAAACCAGACCCTCCGCCTGTGTTACGTGTTGATGACCGGCAGCGGCTGGCC
CGGGAGCGACGTGAGGAACGGGAGAAACAGCTAGCTGCAAGAGAAATAGTGTGGTTAGAAAGAGAAGAGC
GAGCCAGGCAGCACTACGAGAAGCACCTGGAAGAGCGGAAGAAGAGGTTGGAGGAGCAGAGGCAGAAGGA
GGAGCGGAGGAGGGCTGCTGTGGAGGAGAAGCGGAGGCAGAGACTTGAGGAGGACAAAGAACGCCACGAA
GCTGTTGTACGGCGCACAATGGAAAGGAGCCAGAAGCCAAAACAGAAGCATAACCGTTGGTCGTGGGGAG
GCTCTCTCCATGGGAGCCCTAGCATCCACAGTGCAGATCCAGACAGGCGGTCAGTTTCCACCATGAATCT
TTCGAAATATGTTGATCCCGTCATTAGCAAGCGGCTCTCCTCTTCATCTGCAACTTTACTAAATTCTCCA
GATAGAGCTCGCCGCCTGCAGCTCAGCCCATGGGAGAGCAGCGTTGTTAACAGACTCCTGACGCCCACAC
ATTCGTTCCTGGCCAGAAGTAAAAGCACAGCTGCCTTGTCTGGAGAAGCAGCATCTTGCAGCCCCATCAT
CATGCCCTACAAAGCTGCACACTCTAGAAATTCGATGGATCGACCAAAACTCTTTGTAACACCACCTGAG
GGCTCTTCTCGCAGGAGGATCATTCATGGCACAGCGAGCTATAAAAAAGAAAGAGAGAGAGAAAATGTAC
TCTTCCTCACATCTGGCACCCGAAGGGCTGTATCTCCATCTAATCCCAAAGCAAGACAACCAGCTCGCTC
CCGACTTTGGCTTCCGTCCAAGTCTCTTCCTCATTTGCCTGGCACACCCAGACCGACATCCTCCTTGCCA
CCCGGCTCAGTCAAAGCTGCTCCTGCTCAGGTCCGGCCCCCATCCCCCGGCAACATCCGCCCTGTCAAGA
GGGAAGTCAAAGTGGAGCCTGAGAAGAAAGATCCTGAGAAGGAACCTCAGAAAGTTGCCAATGAGCCCTC
ACTAAAGGGCAGAGCACCTTTAGTGAAGGTAGAAGAAGCCACAGTTGAAGAGCGGACACCTGCTGAACCA
GAAGTTGGCCCTGCTGCTCCAGCCATGGCCCCAGCTCCAGCCTCGGCCCCAGCTCCAGCCTCGGCCCCAG
CTCCAGCCCCGGTCCCCACCCCAGCCATGGTCTCAGCCCCGTCATCCACTGTGAATGCCAGTGCTTCTGT
TAAGACTTCTGCAGGCACCACCGACCCAGAGGAGGCCACAAGGCTTCTAGCTGAGAAGAGGCGGCTGGCC
CGAGAGCAGAGAGAAAAGGAAGAAAGGGAGAGGAGGGAGCAGGAAGAGCTTGAAAGACAAAAGAGAGAGG
AATTGGCTCAACGTGTGGCTGAAGAGAGGACGACTCGCCGTGAGGAGGAGTCGCGCAGGCTGGAAGCCGA
GCAGGCCCGGGAGAAGGAGGAGCAGCTGCAGCGGCAGGCGGAGGAGCGGGCGCTGCGCGAGCGGGAGGAG
GCAGAGCGCGCCCAGAGGCAGAAAGAAGAAGAAGCTCGCGTTCGTGAAGAAGCAGAGAGGGTCCGGCAGG
AACGAGAGAAGCATTTCCAGAGAGAAGAGCAAGAGCGCCTGGAGAGAAAGAAGCGACTTGAGGAGATTAT
GAAAAGAACCAGGAGAACAGAAGCTACAGATAAGAAAACCAGTGATCAGAGAAACGGTGATATAGCCAAG
GGAGCTCTCACTGGAGGAACAGAGGTGTCTGCACTTCCATGTACAACAAACGCTCCGGGAAATGGAAAGC
CAGTTGGCAGCCCACATGTGGTTACCTCACACCAGTCAAAAGTGACAGTGGAGAGCACTCCCGATTTGGA
AAAACAACCAAATGAAAATGGTGTATCTGTTCAGAATGAAAATTTTGAAGAAATTATAAACTTACCCATT
GGATCTAAACCATCCAGATTAGATGTCACCAACAGTGAGAGCCCAGAAATTCCTTTGAATCCAATTTTGG
CCTTTGATGATGAAGGGACACTTGGGCCCCTGCCTCAGGTAGATGGTGTTCAGACACAGCAGACTGCAGA
AGTTATATGA

Translation (749 aa):
MAELGAGGDGHRGGDGAVRSETAPDSYKVQDKKNASSRPASAISGQNNNHSGNKPDPPPVLRVDDRQRLA
RERREEREKQLAAREIVWLEREERARQHYEKHLEERKKRLEEQRQKEERRRAAVEEKRRQRLEEDKERHE
AVVRRTMERSQKPKQKHNRWSWGGSLHGSPSIHSADPDRRSVSTMNLSKYVDPVISKRLSSSSATLLNSP
DRARRLQLSPWESSVVNRLLTPTHSFLARSKSTAALSGEAASCSPIIMPYKAAHSRNSMDRPKLFVTPPE
GSSRRRIIHGTASYKKERERENVLFLTSGTRRAVSPSNPKARQPARSRLWLPSKSLPHLPGTPRPTSSLP
PGSVKAAPAQVRPPSPGNIRPVKREVKVEPEKKDPEKEPQKVANEPSLKGRAPLVKVEEATVEERTPAEP
EVGPAAPAMAPAPASAPAPASAPAPAPVPTPAMVSAPSSTVNASASVKTSAGTTDPEEATRLLAEKRRLA
REQREKEERERREQEELERQKREELAQRVAEERTTRREEESRRLEAEQAREKEEQLQRQAEERALREREE
AERAQRQKEEEARVREEAERVRQEREKHFQREEQERLERKKRLEEIMKRTRRTEATDKKTSDQRNGDIAK
GALTGGTEVSALPCTTNAPGNGKPVGSPHVVTSHQSKVTVESTPDLEKQPNENGVSVQNENFEEIINLPI
GSKPSRLDVTNSESPEIPLNPILAFDDEGTLGPLPQVDGVQTQQTAEVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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