NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51735.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51735.1 Public Mus musculus 6 Garin1a 23 108 98 CCDS HistoryNCBI Gene:245884Re-query CCDS DB by CCDS ID:51735.1Re-query CCDS DB by GeneID:245884See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51735.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115286.3 ENSMUSP00000110941.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115286.3Link to Ensembl Protein Viewer:ENSMUSP00000110941.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115286Re-query CCDS DB by Protein ID:ENSMUSP00000110941
Original member Current member NCBI NM_001101486.2 NP_001094956.1 Accepted alive Link to Nucleotide Sequence:NM_001101486.2Link to Protein Sequence:NP_001094956.1Re-query CCDS DB by Nucleotide ID:NM_001101486Re-query CCDS DB by Protein ID:NP_001094956Link to BLAST:NP_001094956.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094956.1 297 B2RXB0 297 100% 0 0

Chromosomal Locations for CCDS 51735.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 29281265 29281417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29283158 29283339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29285879 29286128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29287662 29287780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 29290329 29290518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (894 nt):
ATGAGTAAAATTAGGGGCCTCCCTCCTGCAATCAGGGACCCAGGCCCTGGAGTGGAACTCGGAGTAGTGG
ATGGCCTGCTTTGTCAACTGATTCATTCTCCAGAATTCAACTTGTTCTCTGACTCTGTGGTGTTTGAGAG
CACCTTTATCCAGGTCACTAAGCAAGGAAACTGGATGGATGCCTATGAAAGATCTGCCACTATGATCCTT
GGAGTAACCTCTTCTGTGCCCTCCTTGCCACTCCCCAATATCCTCCTGATGGCCAATGTCACCTGGCCTC
ACGGTCCGTTTTCCACCTGTAGCACACTTGGTGCCCCTGTCATCACCCTCAGCAGGATTCTCCCCCTGAA
GTATGTGGAGCTGCAAATCTATGACCGGACGCAGCGCATCCTCCGCGTTAGGACAGTGACGGAGAAGATC
TACTACCTGAGGCTCCACGAGAAACATCCACAGGCTGTGTTTCAGTTCTGGATCCGGTTGGTGAAAATTT
TACAGAAAGGTCTGTCCATCACCACCAAAGACCCAAGAATCCAGTTCACTCACTGCCTGGTGCCCAAGAT
GTCCAACTCCTCCACTGAAACAGCAACTGAAAGCAGCCTGCCTGCATCCTCCCAGAACAGCGAGGCCATA
ATGCTGCTGGCAGCCGAGCGGAACAGCAGCAGTCTCTTAGAACTCTCAAACAGACACCAGACCTCAAGAG
ACAGGCACACTGATACTGCCACAGAAACAGACAACTCCGGCAACTGCAAGTCAACCCCACTGGTGGCATC
TTCAGCTAGTATGCCCATGAGAGCTGCTTTGACCCACAGTCTCTGGGAACAAGAGGACTCAAATGAGAAC
TTCCTGCAGGCTCCTGTAGCCAGCTCCCTAGGAGAGAACTTGTTGGGACCCTAA

Translation (297 aa):
MSKIRGLPPAIRDPGPGVELGVVDGLLCQLIHSPEFNLFSDSVVFESTFIQVTKQGNWMDAYERSATMIL
GVTSSVPSLPLPNILLMANVTWPHGPFSTCSTLGAPVITLSRILPLKYVELQIYDRTQRILRVRTVTEKI
YYLRLHEKHPQAVFQFWIRLVKILQKGLSITTKDPRIQFTHCLVPKMSNSSTETATESSLPASSQNSEAI
MLLAAERNSSSLLELSNRHQTSRDRHTDTATETDNSGNCKSTPLVASSASMPMRAALTHSLWEQEDSNEN
FLQAPVASSLGENLLGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH