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Report for CCDS51623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51623.1 Public Mus musculus 5 Kctd10 23 108 98 CCDS HistoryNCBI Gene:330171Re-query CCDS DB by CCDS ID:51623.1Re-query CCDS DB by GeneID:330171See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001125.5 ENSMUSP00000001125.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001125.5Link to Ensembl Protein Viewer:ENSMUSP00000001125.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000001125Re-query CCDS DB by Protein ID:ENSMUSP00000001125
Original member Current member NCBI NM_001159941.1 NP_001153413.1 Accepted alive Link to Nucleotide Sequence:NM_001159941.1Link to Protein Sequence:NP_001153413.1Re-query CCDS DB by Nucleotide ID:NM_001159941Re-query CCDS DB by Protein ID:NP_001153413Link to BLAST:NP_001153413.1

Chromosomal Locations for CCDS 51623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114365642 114365866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114367209 114367404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114368342 114368394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114368941 114369030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114370059 114370228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114374896 114375109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114380426 114380428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGAAGAGATGTCAGGAGACAGCGTGGTGAGCTCAGCGGTGCCAGCGGCTGCCACCCGCACTACTTCCT
TCAAGGGTGCCAGCCCCAGCTCCAAGTACGTGAAGCTGAACGTGGGGGGCGCTCTCTACTACACCACCAT
GCAGACGCTCACCAAGCAGGACACCATGCTGAAGGCCATGTTCAGTGGACGCATGGAAGTGCTCACGGAC
AGCGAAGGCTGGATCCTCATTGACCGCTGTGGGAAGCACTTTGGGACAATCCTCAACTACCTGCGAGACG
GGGGTGTACCCTTGCCTGAGAGCCGCCGGGAGATCGAGGAGCTGCTAGCCGAGGCCAAGTACTACCTGGT
GCAGGGCCTGCTGGAAGAGTGCCAGGCCGCCCTACAACAGAACAAAGATACTTACGAGCCCTTCTGCAAG
GTACCCGTCATCACATCCTCCAAGGAAGAACAGAGGCTTATAGCGACGTCAAATAAGCCCGCCGTGAAGC
TGCTCTACAACAGGAGCAACAACAAGTACTCCTACACCAGCAATTCTGACGATAACATGTTGAAAAACAT
CGAACTGTTCGATAAGCTGTCCCTGCGCTTCAACGGGCGGGTCCTGTTCATTAAGGACGTCATCGGGGAC
GAGATCTGCTGTTGGTCATTTTACGGCCAGGGCCGGAAAATCGCTGAAGTCTGTTGTACCTCCATCGTCT
ACGCCACTGAGAAGAAGCAGACCAAGGTTGAGTTCCCTGAAGCCCGCATTTATGAGGAGACCCTGAATAT
CTTGCTGTACGAGGCCCAGGATGGCCGAGGACCTGACAATGCCCTCCTGGAGGCCACGGGCGGGGCAGCT
GGACGTTCTCATCACCTGGACGAGGACGAGGAGCGGGAGCGGGAGCGGATCGAGCGCGTGAGGAGGATCC
ATATCAAGCGCCCAGATGACCGGGCCCACCTCCACCAGTGA

Translation (316 aa):
MEEMSGDSVVSSAVPAAATRTTSFKGASPSSKYVKLNVGGALYYTTMQTLTKQDTMLKAMFSGRMEVLTD
SEGWILIDRCGKHFGTILNYLRDGGVPLPESRREIEELLAEAKYYLVQGLLEECQAALQQNKDTYEPFCK
VPVITSSKEEQRLIATSNKPAVKLLYNRSNNKYSYTSNSDDNMLKNIELFDKLSLRFNGRVLFIKDVIGD
EICCWSFYGQGRKIAEVCCTSIVYATEKKQTKVEFPEARIYEETLNILLYEAQDGRGPDNALLEATGGAA
GRSHHLDEDEERERERIERVRRIHIKRPDDRAHLHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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