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Report for CCDS51577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51577.1 Public Mus musculus 5 Scpppq1 23 108 98 CCDS HistoryNCBI Gene:100271704Re-query CCDS DB by CCDS ID:51577.1Re-query CCDS DB by GeneID:100271704See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51577.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164471.7 ENSMUSP00000132880.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164471.7Link to Ensembl Protein Viewer:ENSMUSP00000132880.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164471Re-query CCDS DB by Protein ID:ENSMUSP00000132880
Original member Current member EBI ENSMUST00000178967.1 ENSMUSP00000136896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178967.1Link to Ensembl Protein Viewer:ENSMUSP00000136896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178967Re-query CCDS DB by Protein ID:ENSMUSP00000136896
Original member Current member EBI ENSMUST00000198485.4 ENSMUSP00000143623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198485.4Link to Ensembl Protein Viewer:ENSMUSP00000143623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198485Re-query CCDS DB by Protein ID:ENSMUSP00000143623
Original member Current member NCBI NM_001163772.1 NP_001157244.1 Accepted alive Link to Nucleotide Sequence:NM_001163772.1Link to Protein Sequence:NP_001157244.1Re-query CCDS DB by Nucleotide ID:NM_001163772Re-query CCDS DB by Protein ID:NP_001157244Link to BLAST:NP_001157244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157244.1 90 B9UIU9 90 100% 0 0

Chromosomal Locations for CCDS 51577.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104071249 104071254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104071973 104071984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104072068 104072097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104073538 104073564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104074229 104074267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104074705 104074773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104074861 104074893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104076517 104076573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGCAGCTTTTCCTCCTGGCCGCCCTGCTGAGCGCTGCAGCTGCTCTGCCAATCCCTCTTGGACAATCCG
GAGGAAGTTCCAGTGAACAGAGATTTAACTTGTACGCACCACAAATCCTGCCTTTCTTCCCTCCGTTTCC
CCTTCCGCAGGCTCCTCTGATCCCGATTCCCTTTCCCTTCCCTTTTGATCCAAATCAGGTTCTGACACCT
AATCAGCTTCTGGAGTTAATCACTTCTATTTTGAACCAACTGCAGGGCTTCCTTGGGAGATAA

Translation (90 aa):
MQLFLLAALLSAAAALPIPLGQSGGSSSEQRFNLYAPQILPFFPPFPLPQAPLIPIPFPFPFDPNQVLTP
NQLLELITSILNQLQGFLGR


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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