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Report for CCDS51298.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51298.1 Public Mus musculus 4 1110065P20Rik 23 108 98 CCDS HistoryNCBI Gene:68920Re-query CCDS DB by CCDS ID:51298.1Re-query CCDS DB by GeneID:68920See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51298.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163946.1 ENSMUSP00000130892.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163946.1Link to Ensembl Protein Viewer:ENSMUSP00000130892.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163946Re-query CCDS DB by Protein ID:ENSMUSP00000130892
Original member Current member EBI ENSMUST00000137769.2 ENSMUSP00000138806.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000137769.2Link to Ensembl Protein Viewer:ENSMUSP00000138806.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000137769Re-query CCDS DB by Protein ID:ENSMUSP00000138806
Original member NCBI NM_001142727.1 NP_001136199.1 Updated not alive Link to Nucleotide Sequence:NM_001142727.1Link to Protein Sequence:NP_001136199.1Re-query CCDS DB by Nucleotide ID:NM_001142727Re-query CCDS DB by Protein ID:NP_001136199
Current member NCBI NM_001142727.2 NP_001136199.1 Accepted alive Link to Nucleotide Sequence:NM_001142727.2Link to Protein Sequence:NP_001136199.1Re-query CCDS DB by Nucleotide ID:NM_001142727Re-query CCDS DB by Protein ID:NP_001136199Link to BLAST:NP_001136199.1

Chromosomal Locations for CCDS 51298.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 124849867 124849962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124850232 124850279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (144 nt):
ATGCTGCGGCAGCTGGGCCGCCGGCGCCCAGAACCGGCTGGTGGCGGGAACGGTTCAGCCAAGTCTGGAG
CGCCGCCCCAGCCATCTGTATCGGCCAGAGGTGGCCTTCCAAAGGATGCTGGCGATGGAGCCTCGGAGTC
TTGA

Translation (47 aa):
MLRQLGRRRPEPAGGGNGSAKSGAPPQPSVSARGGLPKDAGDGASES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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