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Report for CCDS51243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51243.1 Public Mus musculus 4 Pde4b 23 108 98 CCDS HistoryNCBI Gene:18578Re-query CCDS DB by CCDS ID:51243.1Re-query CCDS DB by GeneID:18578See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000097950.8 ENSMUSP00000095562.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097950.8Link to Ensembl Protein Viewer:ENSMUSP00000095562.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097950Re-query CCDS DB by Protein ID:ENSMUSP00000095562
Original member NCBI NM_001177980.1 NP_001171451.1 Updated not alive Link to Nucleotide Sequence:NM_001177980.1Link to Protein Sequence:NP_001171451.1Re-query CCDS DB by Nucleotide ID:NM_001177980Re-query CCDS DB by Protein ID:NP_001171451
Current member NCBI NM_001177980.2 NP_001171451.1 Accepted alive Link to Nucleotide Sequence:NM_001177980.2Link to Protein Sequence:NP_001171451.1Re-query CCDS DB by Nucleotide ID:NM_001177980Re-query CCDS DB by Protein ID:NP_001171451Link to BLAST:NP_001171451.1

Chromosomal Locations for CCDS 51243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 102570648 102570878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102590831 102590924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102595934 102596112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102597459 102597557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102597694 102597858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102599643 102599742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102601533 102601687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102601779 102601901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102602587 102602769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 102604974 102605339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGAAGGAGCAAGGGGGCACCGTCAGTGGCGCCGCGAGCAGCCGAGGTGGAGGAGACTCGGCTATGGCCA
GCCTGCAGCCACTGCAGCCTAACTACCTGTCTGTGTGTTTGTTTCCAGAAGAATCATATCAGAAACTAGC
AATGGAGACGCTGGAGGAACTAGACTGGTGCCTAGACCAGCTAGAGACCATCCAGACCTACCGCTCTGTC
AGCGAGATGGCTTCAAACAAGTTCAAAAGGATGCTGAACCGGGAGCTGACACACCTCTCAGAGATGAGCA
GATCAGGGAACCAGGTGTCTGAGTACATTTCAAACACGTTCTTAGACAAGCAGAACGATGTGGAAATCCC
ATCTCCCACGCAGAAGGACAGGGAGAAGAAGAAGAAGCAGCAGCTCATGACCCAGATAAGTGGAGTGAAG
AAACTGATGCACAGCTCAAGCCTGAACAACACAAGCATCTCACGCTTCGGAGTCAACACGGAAAATGAGG
ATCATCTAGCCAAGGAGCTGGAAGACCTGAACAAATGGGGCCTTAACATCTTCAATGTGGCTGGGTACTC
ACATAATCGGCCCCTTACGTGCATCATGTATGCAATATTCCAGGAAAGAGACCTTCTGAAGACGTTTAAA
ATCTCATCTGACACCTTTGTAACCTACATGATGACTTTAGAAGACCATTACCATTCTGATGTGGCATATC
ACAACAGCCTGCATGCTGCTGACGTGGCCCAGTCAACTCACGTTCTCCTTTCTACGCCGGCACTGGATGC
TGTCTTCACAGACCTGGAAATCCTGGCTGCCATTTTTGCAGCTGCCATCCATGATGTCGATCATCCTGGA
GTCTCCAATCAGTTTCTCATCAATACAAATTCTGAACTTGCTTTGATGTATAATGATGAATCTGTTCTGG
AAAACCATCACCTTGCTGTGGGATTCAAATTGCTACAAGAGGAACACTGCGACATCTTTCAGAATCTTAC
CAAGAAGCAACGCCAGACACTCAGGAAAATGGTGATTGACATGGTGTTGGCAACTGATATGTCCAAACAC
ATGAGCCTCCTGGCAGACCTTAAAACAATGGTAGAAACCAAGAAGGTGACAAGCTCCGGTGTTCTCCTCC
TGGACAACTATACTGACCGGATACAGGTTCTTCGCAACATGGTACACTGTGCAGACCTGAGCAACCCCAC
CAAGTCCTTGGAATTGTATCGGCAATGGACCGATCGTATCATGGAGGAGTTTTTCCAGCAGGGAGACAAA
GAACGGGAGAGGGGAATGGAGATTAGCCCAATGTGTGATAAGCACACAGCTTCTGTGGAAAAATCCCAGG
TTGGTTTCATTGACTACATTGTCCATCCACTGTGGGAGACCTGGGCAGACCTGGTTCAACCGGATGCTCA
AGATATTCTGGATACACTAGAAGATAACAGGAACTGGTACCAGAGTATGATACCCCAGAGCCCTTCCCCG
CCACTGGATGAGAGGAGCAGGGACTGCCAAGGCCTGATGGAGAAGTTTCAGTTTGAACTGACCCTTGAGG
AAGAGGATTCTGAGGGACCGGAAAAGGAGGGAGAAGGCCACAGCTATTTCAGCAGCACAAAGACGCTTTG
TGTGATTGATCCAGAGAACAGGGATTCTCTGGAAGAGACTGACATAGACATTGCAACAGAAGACAAGTCT
CCGATCGACACATAA

Translation (564 aa):
MKEQGGTVSGAASSRGGGDSAMASLQPLQPNYLSVCLFPEESYQKLAMETLEELDWCLDQLETIQTYRSV
SEMASNKFKRMLNRELTHLSEMSRSGNQVSEYISNTFLDKQNDVEIPSPTQKDREKKKKQQLMTQISGVK
KLMHSSSLNNTSISRFGVNTENEDHLAKELEDLNKWGLNIFNVAGYSHNRPLTCIMYAIFQERDLLKTFK
ISSDTFVTYMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPG
VSNQFLINTNSELALMYNDESVLENHHLAVGFKLLQEEHCDIFQNLTKKQRQTLRKMVIDMVLATDMSKH
MSLLADLKTMVETKKVTSSGVLLLDNYTDRIQVLRNMVHCADLSNPTKSLELYRQWTDRIMEEFFQQGDK
ERERGMEISPMCDKHTASVEKSQVGFIDYIVHPLWETWADLVQPDAQDILDTLEDNRNWYQSMIPQSPSP
PLDERSRDCQGLMEKFQFELTLEEEDSEGPEKEGEGHSYFSSTKTLCVIDPENRDSLEETDIDIATEDKS
PIDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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