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Report for CCDS50998.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50998.1 Public Mus musculus 3 BC028528 23 108 98 CCDS HistoryNCBI Gene:229600Re-query CCDS DB by CCDS ID:50998.1Re-query CCDS DB by GeneID:229600See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50998.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090476.9 ENSMUSP00000102749.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090476.9Link to Ensembl Protein Viewer:ENSMUSP00000102749.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000090476Re-query CCDS DB by Protein ID:ENSMUSP00000102749
Original member Current member EBI ENSMUST00000171519.1 ENSMUSP00000127666.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171519.1Link to Ensembl Protein Viewer:ENSMUSP00000127666.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171519Re-query CCDS DB by Protein ID:ENSMUSP00000127666
Original member NCBI NM_153513.3 NP_705733.2 Updated not alive Link to Nucleotide Sequence:NM_153513.3Link to Protein Sequence:NP_705733.2Re-query CCDS DB by Nucleotide ID:NM_153513Re-query CCDS DB by Protein ID:NP_705733
Current member NCBI NM_153513.4 NP_705733.2 Accepted alive Link to Nucleotide Sequence:NM_153513.4Link to Protein Sequence:NP_705733.2Re-query CCDS DB by Nucleotide ID:NM_153513Re-query CCDS DB by Protein ID:NP_705733Link to BLAST:NP_705733.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705733.2 148 Q8R2K8-1 148 100% 0 0

Chromosomal Locations for CCDS 50998.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95884973 95885071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95888141 95888296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95888857 95888915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95889723 95889809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95891885 95891930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGGATGTCCTCTTTATAGCCCTCCTTGTTGCACCACTCATCCTGGGACAGGAATACGACCATGAAGAGC
AGCTGGAAGAGGGTGATTACTATCAAGTGGCATATTATTATTACACAGTGACCCCTAATTATGATGACTT
CAGTGTAAACTTCACTGTTGATTACTCCGTGTTTGAGTCAGAGGATAGGTTGAACAGGTTGAATAAGGAG
GTAACAACAACAGAAGCGGTAGAGACTACAGCCTCTTCATACAGTCTTCATACAGAACTTATGGACCCTC
AGAATCCTGTAACCACGAAACCAGTGACCACAGAACCAGTGACCACAGAACCAGTGACCACAGAACCACA
GAGTCCAAATCAGAATGATGCCATGTCCACGCTGCAGAGTCCTGTGTCCTGCTTTCTGTTATGGACCCTC
CTTCAAGGAGGGGTACATTTTATGTAG

Translation (148 aa):
MDVLFIALLVAPLILGQEYDHEEQLEEGDYYQVAYYYYTVTPNYDDFSVNFTVDYSVFESEDRLNRLNKE
VTTTEAVETTASSYSLHTELMDPQNPVTTKPVTTEPVTTEPVTTEPQSPNQNDAMSTLQSPVSCFLLWTL
LQGGVHFM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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