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Report for CCDS50965.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
50965.1 |
Public |
Mus musculus |
3 |
Ubap2l |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:74383](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:50965.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:74383](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 3 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 50965.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000199834.4 |
ENSMUSP00000143254.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000199834.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000143254.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000199834](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000143254](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000195995.4 |
ENSMUSP00000143638.1 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000195995.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000143638.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000195995](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000143638](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001165985.2 |
NP_001159457.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001165985.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001159457.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001165985](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001159457](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001159457.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001165986.1 |
NP_001159458.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001165986.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001159458.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001165986](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001159458](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001159458.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 50965.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (3045 nt): ATGATGACGTCGGTGGGCACTAACCGAGCCCGGGGAAACTGGGAACAACCTCAAAACCAAAACCAGACAC AGCACAAGCAGCGGCCACAGGCCACTGCAGAGCAAATTCGACTTGCACAGATGATTTCGGACCATAATGA TGCTGACTTTGAGGAGAAGGTGAAACAATTGATTGATATCACAGGCAAAAACCAGGATGAATGTGTGATT GCTTTGCATGACTGCAATGGAGATGTCAACAGAGCCATCAATGTTCTCCTGGAAGGAAATCCAGACACGC ATTCCTGGGAGATGGTTGGGAAGAAGAAAGGAGTCTCAGGACAAAAGGATGGTGGACAAACTGAATCTAA TGAAGAAGGAAAAGAAAATCGAGACCGGGACAGAGACTATAGTCGGCGACGTGGTGGGCCACCAAGACGG GGGAGAGGTGCCAGCCGTGGACGAGAGTGTATGCATGGGGCTTTATCAAAACCAGCTGTGGTTCGGGGCC AGGAAAATGGATTGGATGGCACCAAGAGTGGAGGGCCTTCTGGAAGAGGCACAGACAGAGGCAGAAGAGG CCGTGGCCGTGGCAGAGGTAGTTCTGGTAGGCGAGGAGGAAGGTTTTCTGCTCAAGGAATGGGAACCTTT AACCCAGCTGATTATGCAGAGCCAGCCAACACTGATGATAACTATGGCAATAGCAGTGGCAATACATGGA ACAACACTGGCCACTTTGAACCAGATGATGGAACAAGACTTGATTTCATTGGGGTTGAGGGGTCAAATTA TCCCCGAAAATTTGAGACTGCTCCTGGTGCATGGAGGACTGCAACAGAAGAGTGGGGAACTGAAGACTGG AATGAAGATCTTTCTGAGACCAAGATCTTTACCGCCTCTAATGTGTCTTCAGTGCCTCTGCCTGCGGAGA ATGTGACAATCACTGCTGGTCAGAGAATTGACCTTGCTGTTCTGTTGGGGAAGACACCATCTTCAATGGA GAATGATTCATCTAATCTGGATCCATCTCAGGCTCCTTCCCTGGCTCAGCCTCTGGTGTTTAGTAATTCG AAGCAGAATGCCATATCACAGCCTGCTTCAGGGAGTACATTTTCTCACCATAGCATGGTGAGCATGTTGG GGAAAGGATTTGGTGATGTTGGGGAAGCTAAAGGTGGCAGTACAACAGGCTCCCAGTTCTTGGAGCAATT CAAGACTGCGCAGGCCCTTGCTCAACTGGCAGCTCAACATTCTCAATCTGGAAGCACTACCACCTCCTCT TGGGATATGGGCTCAACAACACAATCACCATCACTGGTGCAGTATGATCTGAAGAGTGCAAATGATTCAA CAGTGCACAGTCCTTTTACAAAGCGCCAGGCATTCACCCCATCTTCAACCATGATGGAGGTATTCCTTCA GGAGAAGCCACCTGCAGTGGCTACCTCGACAGCTGCACCACCTCCCCCGTCTTCTCCTCTGCCAAGCAAA TCCACCTCGGCTCCACAGATGTCTCCGGGGTCTTCAGACAACCAGTCCTCCAGCCCTCAGCCGGCTCAGC AGAAACTGAAACAGCAAAAGAAGAAAACCTCCTTGACGTCTAAGATTCCTGCTCTGGCTGTGGAGATGCC TGGCTCAGCAGATATCTCAGGGCTAAATCTACAGTTTGGGGCATTGCAGTTTGGGTCAGAGCCTGTCCTT TCTGATTATGAGTCCACCCCCACCACGAGCGCCTCCTCAAGCCAGGCTCCTAGTAGCCTGTATACCAGCA CGGCCAGTGAGTCTTCATCTACAGTTTCATCTAATCAGAGTCAGGAGTCTGGTTATCAGAGTGGCCCGAT TCAGTCGACAACTTATACCTCCCAAAATAATGCTCAGGGCCCTCTATATGAACAGAGATCCACACAGACG CGGCGGTATCCCAGCTCCATCTCTTCATCACCCCAAAAGGACCTGACTCAGGCTAAGAATGGTTTTAGCT CTGTGCAGGCCACGCAGTTACAGACCACGCAATCTGTTGAAGGTGCTACAGGCTCTGCAGTGAAATCTGA ATCACCTTCCACTTCTAGTATACCCTCTCTCAATGAAACAGTACCTGCAGCTTCCTTACTGACGACAGCC AATCAGCATTCATCCTCCTTAAGTGGCTTGAGCCATACGGAGGAGATTCCAAATACCACCACCACACAAC ATAGCAGTGCATTATCTACACAGCAGAATACCCTTTCTTCATCAACATCTTCTGGGCGTACTTCAACATC CACTCTTTTGCATACAAGTGTGGAGAGTGAGGCAAATCTACATTCTTCCTCCAGCACCTTCTCTACCACA TCCAGCACTGTCTCTGCACCTCCCCCAGTGGTCAGTGTCTCCTCCAGTCTGAATAGTGGCAGTAGTCTGG GCCTTAGCCTGGGCAGCAACTCTACTGTCACAGCCTCAACTCGAAGCTCAGTTGCTACAACTTCAGGAAA AGCTCCTCCCAACCTTCCTCCTGGAGTCCCGCCATTGTTGCCTAATCCATATATTATGGCTCCGGGGCTG TTACATGCCTATCCGCCACAAGTATATGGTTATGATGATTTACAGATGCTCCAGACAAGATTTCCATTGG ATTACTACAGTATCCCGTTTCCCACACCCACCACTCCACTTACTGGGAGGGATGGTAGCCTGGCCAGCAA CCCTTACTCTGGCGACCTCACCAAATTCGGCCGCGGGGATGCCTCCTCCCCAGCCCCAGCCACAACCTTG GCCCAACCCCAACAGAACCAGACGCAGACTCACCACACCACGCAGCAGACATTCCTGAACCCGGCGCTGC CTCCTGGCTATAGTTACACCAGCCTGCCATACTACACAGGGGTCCCGGGCCTCCCCAGCACCTTCCAGTA TGGGCCTGCTGTGTTCCCTGTGGCTCCTACCTCTTCCAAGCAGCATGGTGTGAATGTCAGTGTGAATGCC TCGGCTACCCCTTTCCAACAGCCAAGTGGATATGGGTCTCATGGATACAACACTGGAAGAAAATATCCAC CCCCTTACAAGCATTTCTGGACGGCTGAGAGCTAA
Translation (1014 aa): MMTSVGTNRARGNWEQPQNQNQTQHKQRPQATAEQIRLAQMISDHNDADFEEKVKQLIDITGKNQDECVI ALHDCNGDVNRAINVLLEGNPDTHSWEMVGKKKGVSGQKDGGQTESNEEGKENRDRDRDYSRRRGGPPRR GRGASRGRECMHGALSKPAVVRGQENGLDGTKSGGPSGRGTDRGRRGRGRGRGSSGRRGGRFSAQGMGTF NPADYAEPANTDDNYGNSSGNTWNNTGHFEPDDGTRLDFIGVEGSNYPRKFETAPGAWRTATEEWGTEDW NEDLSETKIFTASNVSSVPLPAENVTITAGQRIDLAVLLGKTPSSMENDSSNLDPSQAPSLAQPLVFSNS KQNAISQPASGSTFSHHSMVSMLGKGFGDVGEAKGGSTTGSQFLEQFKTAQALAQLAAQHSQSGSTTTSS WDMGSTTQSPSLVQYDLKSANDSTVHSPFTKRQAFTPSSTMMEVFLQEKPPAVATSTAAPPPPSSPLPSK STSAPQMSPGSSDNQSSSPQPAQQKLKQQKKKTSLTSKIPALAVEMPGSADISGLNLQFGALQFGSEPVL SDYESTPTTSASSSQAPSSLYTSTASESSSTVSSNQSQESGYQSGPIQSTTYTSQNNAQGPLYEQRSTQT RRYPSSISSSPQKDLTQAKNGFSSVQATQLQTTQSVEGATGSAVKSESPSTSSIPSLNETVPAASLLTTA NQHSSSLSGLSHTEEIPNTTTTQHSSALSTQQNTLSSSTSSGRTSTSTLLHTSVESEANLHSSSSTFSTT SSTVSAPPPVVSVSSSLNSGSSLGLSLGSNSTVTASTRSSVATTSGKAPPNLPPGVPPLLPNPYIMAPGL LHAYPPQVYGYDDLQMLQTRFPLDYYSIPFPTPTTPLTGRDGSLASNPYSGDLTKFGRGDASSPAPATTL AQPQQNQTQTHHTTQQTFLNPALPPGYSYTSLPYYTGVPGLPSTFQYGPAVFPVAPTSSKQHGVNVSVNA SATPFQQPSGYGSHGYNTGRKYPPPYKHFWTAES
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