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Report for CCDS50944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50944.1 Public Mus musculus 3 Fcrl5 23 108 98 CCDS HistoryNCBI Gene:329693Re-query CCDS DB by CCDS ID:50944.1Re-query CCDS DB by GeneID:329693See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50944.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000166297.6 ENSMUSP00000131176.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166297.6Link to Ensembl Protein Viewer:ENSMUSP00000131176.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166297Re-query CCDS DB by Protein ID:ENSMUSP00000131176
Original member Current member EBI ENSMUST00000193229.5 ENSMUSP00000141311.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193229.5Link to Ensembl Protein Viewer:ENSMUSP00000141311.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193229Re-query CCDS DB by Protein ID:ENSMUSP00000141311
Original member Current member NCBI NM_001113238.1 NP_001106709.1 Accepted alive Link to Nucleotide Sequence:NM_001113238.1Link to Protein Sequence:NP_001106709.1Re-query CCDS DB by Nucleotide ID:NM_001113238Re-query CCDS DB by Protein ID:NP_001106709Link to BLAST:NP_001106709.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106709.1 508 Q68SN8-2 508 100% 0 0

Chromosomal Locations for CCDS 50944.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87435885 87435948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87440188 87440208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87443534 87443794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87444057 87444341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87446245 87446526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87448159 87448437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87454624 87454731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87455752 87455779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87457108 87457190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87457370 87457432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87457784 87457836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGTCTGGTTCATTCTCACCCTGTGTGGTGTTCACACAGATGTGGCTGACTCTACTGGTTGTGACTCCTG
TCAATGGACAGCATGATTTTCTGGTGCTGCAAGCTCCACCTGCTGTGTTTGAAGGAGACTCTGTGGTTCT
GAGGTGCTACGCAAAGAAAGGCATAGAAGCAGAGACCCTGACATTTTACAAGGATGGTAAAGCTCTGACA
TTACATCCTCAAAGTTCTGAGTTCTATATTCATCGTGCAAATCTGAAGGACAACGGTCAATACAAATGCA
CTTCGAAGAAGAAGTGGTCTTTTGGGTCCCTCTATACTTCCAATACGGTCGTAGTTCAAGTCCAAGAGTT
GTTCCCACGGCCTGTGCTGAGAGCCAGACCCTCCCATCCCATAGATGGAAGTCCAGTGACCCTGACGTGT
CAGACCCAGCTCTCTGCACAGAAGTCAGATGCCCGGCTCCAGTTCTGTTTCTTCAGAAACCTCCAGCTTC
TGGGGTCAGGCTGCAGCCGCTCCTCGGAGTTTCACATTCCTGCCATATGGACTGAAGAGTCAAAGAGATA
CCAGTGCAAGGCAGAAACAGTGAATTCCCAAGTTAGTAAACAAAGTACAGCGTTCATAATTCCAGTGCAG
AGAGCTTCTGCGAGATTCCAAACACACATCATCCCAGCCTCAAAGTTGGTGTTTGAAGGGCAGTTGCTGT
TACTCAACTGCTCAGTAAAAGGAGTCCCAGGACCCCTCAAATTCTCCTGGTATAAAAAGGACATGCTGAA
TAAAGAAACAAAGATTCTTAAGTCCTCCAACGCAGAATTCAAGATCTCCCAGGTGAACATCAGTGACGCA
GGGGAGTATTACTGTGAAGCTAACAACAGCCGCCGAAGCTTTGTCAGCAGGGCATTTCCCATCACCATAA
AAGTCCCAGTATCTCAACCAGTTCTCACCCTAAGCACAGGCAAGACCCAGGCCCTTGAGGGAGACTTGAT
GACACTTCATTGTCAATCCCAGAGGGGCTCTCCATGTATCCTGTATGAATTCTTCTATGAGAATGTCTCC
CTGGGGAATAGCTCTATACTCTCTGGAGGAGGAGCATACTTCAATTTCTCTATGAGCACAGAGCGATCTG
GAAACTACTACTGCACAGCAGACAATGGCCTGGGAGCCCAGTGCAGTGAAGCTATAAGGATCTCTATCTT
TGACATGACAAAGAACAGAAGTGTTCCTATGGCTGCCGGAATCACTGTGGGACTGCTCATCATGGCTGTT
GGAGTGTTTCTGTTTTATTGCTGGTTCTCTAGAAAAGCAGGAGGAAAGCCTACCTCTGATGACTCCAGGA
ACCCTTCAGATTCAGAACCCCAGGAGCCCACCTATTACAACGTACCAGCCTGTATAGAACTGCAGCCAGT
GTACAGCAATGAGCCTGAGGAAAACGTGATTTACACAGAAGTACGGAGAACTCAACCAAGACAGAAACAT
GCAGATCAGGAGTCTGAAAGCCCAAGATCAAGGTGCCAGATGGCTGAGAAAAAGTAG

Translation (508 aa):
MSGSFSPCVVFTQMWLTLLVVTPVNGQHDFLVLQAPPAVFEGDSVVLRCYAKKGIEAETLTFYKDGKALT
LHPQSSEFYIHRANLKDNGQYKCTSKKKWSFGSLYTSNTVVVQVQELFPRPVLRARPSHPIDGSPVTLTC
QTQLSAQKSDARLQFCFFRNLQLLGSGCSRSSEFHIPAIWTEESKRYQCKAETVNSQVSKQSTAFIIPVQ
RASARFQTHIIPASKLVFEGQLLLLNCSVKGVPGPLKFSWYKKDMLNKETKILKSSNAEFKISQVNISDA
GEYYCEANNSRRSFVSRAFPITIKVPVSQPVLTLSTGKTQALEGDLMTLHCQSQRGSPCILYEFFYENVS
LGNSSILSGGGAYFNFSMSTERSGNYYCTADNGLGAQCSEAIRISIFDMTKNRSVPMAAGITVGLLIMAV
GVFLFYCWFSRKAGGKPTSDDSRNPSDSEPQEPTYYNVPACIELQPVYSNEPEENVIYTEVRRTQPRQKH
ADQESESPRSRCQMAEKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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