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Report for CCDS50890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50890.1 Public Mus musculus 3 Fxr1 23 108 98 CCDS HistoryNCBI Gene:14359Re-query CCDS DB by CCDS ID:50890.1Re-query CCDS DB by GeneID:14359See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000200392.4 ENSMUSP00000143392.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000200392.4Link to Ensembl Protein Viewer:ENSMUSP00000143392.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000200392Re-query CCDS DB by Protein ID:ENSMUSP00000143392
Original member NCBI NM_008053.2 NP_032079.1 Updated not alive Link to Nucleotide Sequence:NM_008053.2Link to Protein Sequence:NP_032079.1Re-query CCDS DB by Nucleotide ID:NM_008053Re-query CCDS DB by Protein ID:NP_032079
NCBI NM_008053.3 NP_032079.1 Updated not alive Link to Nucleotide Sequence:NM_008053.3Link to Protein Sequence:NP_032079.1Re-query CCDS DB by Nucleotide ID:NM_008053Re-query CCDS DB by Protein ID:NP_032079
Current member NCBI NM_008053.4 NP_032079.1 Accepted alive Link to Nucleotide Sequence:NM_008053.4Link to Protein Sequence:NP_032079.1Re-query CCDS DB by Nucleotide ID:NM_008053Re-query CCDS DB by Protein ID:NP_032079Link to BLAST:NP_032079.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032079.1 539 Q61584-2 539 100% 0 0

Chromosomal Locations for CCDS 50890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 34020113 34020163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34039527 34039579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34041063 34041156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34046032 34046103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34046437 34046585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34046966 34047059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34047632 34047748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34049153 34049323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34050075 34050153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34054222 34054331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34056330 34056416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34058024 34058081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34058169 34058231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34061828 34062031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34064119 34064319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 34068917 34068933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGGCGGAGCTGACGGTGGAGGTTCGCGGCTCCAACGGGGCTTTCTACAAGGGATTTATCAAAGATGTCC
ACGAAGACTCCCTCACAGTTGTTTTTGAAAATAATTGGCAACCAGAACGCCAGGTTCCGTTTAATGAAGT
GCGATTACCACCACCACCTGATATAAAAAAAGAAATTAGTGAAGGAGATGAAGTAGAGGTATATTCAAGA
GCAAATGACCAAGAGCCATGTGGATGGTGGCTGGCTAAAGTTCGGATGATGAAAGGCGAGTTTTATGTCA
TTGAATATGCTGCTTGTGATGCCACTTACAATGAAATAGTCACATTTGAACGACTTCGGCCTGTCAATCA
AAATAAAACTGTCAAAAAAAATACCTTCTTTAAGTGCACAGTGGATGTTCCTGAGGACCTGAGAGAAGCG
TGTGCTAATGAAAATGCCCATAAAGATTTTAAGAAAGCAGTAGGAGCATGCAGAATCTTTTATCATCCTG
AAACTACCCAGCTAATGATACTGTCGGCCAGTGAAGCAACTGTGAAGAGAGTAAATATCTTAAGTGATAT
GCATTTGAGAAGTATTCGGACGAAGTTGATGCTTATGTCCAGAAATGAAGAGGCCACTAAGCATTTAGAA
TGCACAAAACAACTTGCAGCAGCTTTTCATGAAGAATTTGTTGTGAGAGAAGATTTAATGGGCCTGGCGA
TAGGAACGCATGGCAGTAACATACAGCAAGCTAGGAAGGTTCCTGGAGTTACTGCCATTGAGTTAGATGA
AGACACCGGAACGTTTAGAATCTATGGAGAGAGTGCTGAGGCTGTAAAAAAAGCTAGAGGTTTCTTGGAA
TTTGTGGAAGATTTTATTCAAGTTCCCAGGAATCTTGTTGGAAAAGTAATTGGAAAAAATGGCAAAGTTA
TTCAAGAAATAGTGGATAAATCTGGTGTGGTTCGAGTAAGAATTGAAGGAGACAATGAAAATAAACTACC
TAGAGAAGACGGAATGGTTCCATTTGTATTTGTTGGCACTAAAGAAAGCATTGGGAATGTGCAAGTTCTT
CTAGAGTATCACATCGCTTACTTAAAGGAAGTGGAACAACTAAGAATGGAACGTCTGCAGATTGATGAGC
AGCTGCGACAGATTGGTTCTAGGTCTTATAGTGGAAGAGGCAGAGGTCGTCGGGGCCCTAATTACACCTC
CGGTTATGGTACAAATTCTGAGCTGTCTAACCCCTCCGAAACAGAATCTGAGCGTAAAGATGAGCTGAGT
GATTGGTCATTGGCAGGAGAAGATGATCGAGAGACTCGACATCAGCGAGACAGCAGGAGACGCCCAGGAG
GAAGAGGCAGAAGTGTTTCTGGGGGACGAGGTCGTGGTGGACCACGTGGTGGCAAATCCTCCATCAGTTC
TGTGCTCAAAGATCCAGACAGCAATCCATACAGCTTACTTGATAATACAGAATCCGATCAGACTGCAGAC
ACTGACGCCAGCGAATCTCACCACAGTACTAACCGTCGTAGGCGGTCTCGTAGACGGAGGACTGATGAAG
ATGCTGTTCTGATGGATGGACTGACTGAATCTGATACAGCCTCAGTTAATGAGAATGGGCTAGGCAAAAG
ATGTGATTGA

Translation (539 aa):
MAELTVEVRGSNGAFYKGFIKDVHEDSLTVVFENNWQPERQVPFNEVRLPPPPDIKKEISEGDEVEVYSR
ANDQEPCGWWLAKVRMMKGEFYVIEYAACDATYNEIVTFERLRPVNQNKTVKKNTFFKCTVDVPEDLREA
CANENAHKDFKKAVGACRIFYHPETTQLMILSASEATVKRVNILSDMHLRSIRTKLMLMSRNEEATKHLE
CTKQLAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDEDTGTFRIYGESAEAVKKARGFLE
FVEDFIQVPRNLVGKVIGKNGKVIQEIVDKSGVVRVRIEGDNENKLPREDGMVPFVFVGTKESIGNVQVL
LEYHIAYLKEVEQLRMERLQIDEQLRQIGSRSYSGRGRGRRGPNYTSGYGTNSELSNPSETESERKDELS
DWSLAGEDDRETRHQRDSRRRPGGRGRSVSGGRGRGGPRGGKSSISSVLKDPDSNPYSLLDNTESDQTAD
TDASESHHSTNRRRRSRRRRTDEDAVLMDGLTESDTASVNENGLGKRCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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