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Report for CCDS50785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50785.1 Public Mus musculus 2 D630003M21Rik 23 108 98 CCDS HistoryNCBI Gene:228846Re-query CCDS DB by CCDS ID:50785.1Re-query CCDS DB by GeneID:228846See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000103121.9 ENSMUSP00000099410.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000103121.9Link to Ensembl Protein Viewer:ENSMUSP00000099410.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000103121Re-query CCDS DB by Protein ID:ENSMUSP00000099410
Original member Current member EBI ENSMUST00000169335.7 ENSMUSP00000130623.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169335.7Link to Ensembl Protein Viewer:ENSMUSP00000130623.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169335Re-query CCDS DB by Protein ID:ENSMUSP00000130623
Original member Current member NCBI NM_001131021.2 NP_001124493.1 Accepted alive Link to Nucleotide Sequence:NM_001131021.2Link to Protein Sequence:NP_001124493.1Re-query CCDS DB by Nucleotide ID:NM_001131021Re-query CCDS DB by Protein ID:NP_001124493Link to BLAST:NP_001124493.1

Chromosomal Locations for CCDS 50785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 158186158 158186287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158196334 158196653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158200154 158200366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158200961 158201083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158203073 158203211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158204660 158204808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158205701 158205799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158208413 158208529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158210139 158210222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158211620 158211713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158213363 158213486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158215828 158216010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158216433 158217777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158220398 158220595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158229084 158229086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3321 nt):
ATGGACCCTTCTGCCCTTGACATGGCCATCCAGCATGCCCTGGCAGGACTCTACCCGCCTTTCGAAGCCA
CTGCTCCCACTGTCCTGGGTCAAGTGTTCCGGCTCCTGGACTCCGACTTCCGGGGAGATGGACTGAGCTT
CCTCTTGGATTTTCTCATCCCTGCCAAGCGTCTGTGTGAGCAAGTGCGGGAAGCGGCTTGTGCCCTCTAT
ACCCACTGCCTCTTCCTGCATGAGGGCTGGCCGTTGTGTCTGCGGGATGAAGTTGTGGTACACCTGGCAC
CACTCAATCCACTCCTGCTACGTCAGGGTGATTTCTACCTTCAAGTAGAGTCCTGGGAGGAGCAGTCTGT
CCACATGACACTCAAGTGTCTCTCTTCAGACCTCCGTGAGGTGGACAAGAAGCCAATTCCTGAGTCCTCC
TACTCTCTCATTTTCACCCCAGAATGGTTGGAGGCCATCAACAATGACTTTGAGGGACGTCCCTTACACA
ACTGTCTCGTGGCTTCAGAAAATGGGATCACACCTGTGCCTTGGACCAAGATTACCAGTCCAGAGTTTGT
AGATGACAGACCCCCAATAGTGAAGGTCCCTTCCTCAGACGGGGACTCCTGTCCACTAGAAGACCTCCAT
CTGAGCAGACCCCAGGAGCCATACCAGGCTGGTGACTTGGGCGGCAAGGGATCTGTGGCCCAGATCTGGG
ATAAGGGTAAAGGGAAGTTGTCTGGGGACAAGTATCCAGGGCTCATCAAGGTGGAGCCAGCAAGGTCAGG
TCAGCTCGCCTTTAGGACAGACAGTGAGGCCAGCCAGAGCCTGGAGGGGGACTATGTGGCTCTCCTGGGC
TTTCCCCAAGAGTATAGAGGGGCATCCCCAGACAGTGAGGTAGTGACATTAAGTGTAGATATTCAAAAAT
CACAGGAGACAAGACCCAGAACTAAGGGGGCACCTCTGCTTGGAAAGACCCTTCCTCTCTCGGGGCCTGC
TGGGGCACCTCCCTTGGGAAGATGGGCATGTGAAAGGCCAGCAGGCTCAGGGGAGAAGCCCTGTAGCGGA
GGCTCAAGGAGAAAGGCCAGGCATAAAGCATCTGGCCACACTGCAGTGCGACAGCCACAGCAGCCCCATA
CTAGTGTCCCGGAGAAGCTGCCGGACTGTACCTCTGGCCTGGTGGAAGACACTGAGGAAGAACCAGCAGC
CTCTGAGATGCAAAAGCCTGTGGGAATGCCAGAAGCCATGGTTCGGCTCAGGCCTGGGCCAAGACAAGCA
TTCTCTCCCCTCCTGTCTTCAGCTGGCCCTGGATCCCCAGCGGCTGAGACAAAGACAGAGGAGACCACAC
TAGGACATGGGAGAGCTTCCAAGCCTGAGGACTGCCTCAATAAGAACGCCTCCTTCCATGGGTCCCCCGC
TCCTGGGCTCCAGTTCTCCTTCTTGAAAGAACAGAGGGTACCCCATGTGACCCCCGAGAAGGCCCTACTC
CAGCATGCCAGGCCTCGGAAGGCCCTGTGCCCCCTCTACTCTCTGCAGCCTTGTGAAGCCAAGGCCCCAG
GCAAAGATGGAACAACTCTCCCCACAACATCTGGCTCAGGCCCACTGTCTGGGGAGCCGCCTGGCTTCCG
GAGAGATTCTGCAGGTCCTCCAGGGGGAGGACTTCGCCTGGAGGAGTGTTCTAGGACTAAGCCCAGGATT
GAGACCCTGGGAGTCAAGCTTCTCCAGTCCGGGATAGCCTGCCTGCCAGGTGGTAGGGACAAGGTGGGGA
GACCGCTGCTTCTGGTGTCAACCGCAGAGGATGCCTGGGAGGCACCATGGTGTACTACCTCAGAGGTCGC
GGAGTTGCTGTCCTACTTATGCAGTGTCCCTAGGCTGGAAGATAAAGCCAAGGGGCTCCTGGTGGTGATT
GATGCCAGGAAAGGGACCCAGAGGCCTGGTCTGGTCAGCGCCCTGCAGGGCATCCAGGCTCTGGCTCCGG
CCTCCGTCAGTAAAGTGCTCCTCCTCGGAGAGAAGGCGTCCATTCCCCAGCTATCTGTGCTACCTGCCCA
GGTGGAGGTACTGACGTCGCTGAAGGCCCTCAGAAACCACGTGGACCCTAGCCAGCTGCCGGAGGCTCTG
GAGGGCCCCTTTCCCTACCACCACAGCGAGTGGGTGCAGTTCTTCCAGAAACTGGACCCATTCCTCACTG
ACCTTCGCCAGGCCTCCTCCCTGCTGCAGGCTTCCATCCAAGAGTTTGAGAAGGGTGAACCCCCTGGTGG
GGTGCAGGAGGCTACCAGGTGCCTGAGCAAGTCCAAGGAGCTGATGGAGACGGTGCTGAGGGACCCGGGC
CTGCTGGCTCTCCAGAGGGAAGGTGGAACTACTCTGGCCAGCTTGCAGCAAGAGGCCAGCGGGCTAAATG
CTAACCCCGATGTCAGGAGCCATCTGACCGAGGCTGCTGCCCTGTACAACCTTGTGGATGGTCAGCTTCA
TGACTTGGTCACTGCGTCCAATCAACTCCTCCGAAGGCTGGAGCTCCGCGTCCGCCTGGGCCACCTGGAG
ACTGCCATCCACCAGGTCAGTGACTGGATGGCGGGAGAAGGCAGCCAGAGTCTGCAGGCTCTCGCTCCTG
TGCATGTATGTGCAGAGACAGTAGAGAAAGTCCACGCAGAGTTTGAGGATTTCTTCCTGCAGGTTGCGGC
CCAGTACCGCCAGGGCCTTGACCTGTCCAAGCAGGCGGCCCAGCTGGGAGCTGCAGAGGAAGGGGCAGGT
GAGATGGGGCTCCCAGACCTGGCGGCCTTCGCCTCCACCCAGCAGGCCTTCCAAGCCAGGCTGACACACT
TCTACATGGCCGCTGAGAGGCAGCGCACTGACCTGGAGACCCTGCTCCATCTCCACCGTTTCAGAAGGAA
GATGTCCCGGTTCCACATGGACTGCCAGAACCTGCTGACCCAGCTCAGCCTGGGCAAGGCTGTGAAGGCC
AGCCCTGGGGACCAGTTGCACCTCCGACTCCACTGCTACCTGAAGCGCCTGGCTTCTGAGTTCCAGACGG
AGAAACTCCTGGCCATGAAGCTCCAGGTGGCCTCCCTGAGCCGGCCTGGCCTGGGCCAGGAGGTGTGGGA
AGAGGCCCAGGAGCGGCACCAGGAGATCCAGAGCTTGCTGAGGAAGGCACTAGCCTACTGCCCATGCCCA
GAGGTTCCAGCTACCCAAGTGGCACTCATAGACCGAAGCAGGACTCGCAGAAATCAAGACGGTTCTTTTC
TGGAAGCCTCGCCCCTGAAGCTAGCTCTCACGGTGGCAGAAGGAGCTACGCAAACTGAGAGAACACTTAT
CACCAGTTCTATCTCGCTGGAAAGCCTGTGA

Translation (1106 aa):
MDPSALDMAIQHALAGLYPPFEATAPTVLGQVFRLLDSDFRGDGLSFLLDFLIPAKRLCEQVREAACALY
THCLFLHEGWPLCLRDEVVVHLAPLNPLLLRQGDFYLQVESWEEQSVHMTLKCLSSDLREVDKKPIPESS
YSLIFTPEWLEAINNDFEGRPLHNCLVASENGITPVPWTKITSPEFVDDRPPIVKVPSSDGDSCPLEDLH
LSRPQEPYQAGDLGGKGSVAQIWDKGKGKLSGDKYPGLIKVEPARSGQLAFRTDSEASQSLEGDYVALLG
FPQEYRGASPDSEVVTLSVDIQKSQETRPRTKGAPLLGKTLPLSGPAGAPPLGRWACERPAGSGEKPCSG
GSRRKARHKASGHTAVRQPQQPHTSVPEKLPDCTSGLVEDTEEEPAASEMQKPVGMPEAMVRLRPGPRQA
FSPLLSSAGPGSPAAETKTEETTLGHGRASKPEDCLNKNASFHGSPAPGLQFSFLKEQRVPHVTPEKALL
QHARPRKALCPLYSLQPCEAKAPGKDGTTLPTTSGSGPLSGEPPGFRRDSAGPPGGGLRLEECSRTKPRI
ETLGVKLLQSGIACLPGGRDKVGRPLLLVSTAEDAWEAPWCTTSEVAELLSYLCSVPRLEDKAKGLLVVI
DARKGTQRPGLVSALQGIQALAPASVSKVLLLGEKASIPQLSVLPAQVEVLTSLKALRNHVDPSQLPEAL
EGPFPYHHSEWVQFFQKLDPFLTDLRQASSLLQASIQEFEKGEPPGGVQEATRCLSKSKELMETVLRDPG
LLALQREGGTTLASLQQEASGLNANPDVRSHLTEAAALYNLVDGQLHDLVTASNQLLRRLELRVRLGHLE
TAIHQVSDWMAGEGSQSLQALAPVHVCAETVEKVHAEFEDFFLQVAAQYRQGLDLSKQAAQLGAAEEGAG
EMGLPDLAAFASTQQAFQARLTHFYMAAERQRTDLETLLHLHRFRRKMSRFHMDCQNLLTQLSLGKAVKA
SPGDQLHLRLHCYLKRLASEFQTEKLLAMKLQVASLSRPGLGQEVWEEAQERHQEIQSLLRKALAYCPCP
EVPATQVALIDRSRTRRNQDGSFLEASPLKLALTVAEGATQTERTLITSSISLESL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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