NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50727.1 Public Mus musculus 2 Shld1 23 108 98 CCDS HistoryNCBI Gene:73747Re-query CCDS DB by CCDS ID:50727.1Re-query CCDS DB by GeneID:73747See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 50727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061891.10 ENSMUSP00000057009.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061891.10Link to Ensembl Protein Viewer:ENSMUSP00000057009.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061891Re-query CCDS DB by Protein ID:ENSMUSP00000057009
Original member Current member EBI ENSMUST00000110132.2 ENSMUSP00000105759.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110132.2Link to Ensembl Protein Viewer:ENSMUSP00000105759.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110132Re-query CCDS DB by Protein ID:ENSMUSP00000105759
Original member NCBI NM_001358260.1 NP_001345189.1 Updated not alive Link to Nucleotide Sequence:NM_001358260.1Link to Protein Sequence:NP_001345189.1Re-query CCDS DB by Nucleotide ID:NM_001358260Re-query CCDS DB by Protein ID:NP_001345189
Current member NCBI NM_001358260.2 NP_001345189.1 Accepted alive Link to Nucleotide Sequence:NM_001358260.2Link to Protein Sequence:NP_001345189.1Re-query CCDS DB by Nucleotide ID:NM_001358260Re-query CCDS DB by Protein ID:NP_001345189Link to BLAST:NP_001345189.1
Original member NCBI NM_001358261.1 NP_001345190.1 Updated not alive Link to Nucleotide Sequence:NM_001358261.1Link to Protein Sequence:NP_001345190.1Re-query CCDS DB by Nucleotide ID:NM_001358261Re-query CCDS DB by Protein ID:NP_001345190
Current member NCBI NM_001358261.2 NP_001345190.1 Accepted alive Link to Nucleotide Sequence:NM_001358261.2Link to Protein Sequence:NP_001345190.1Re-query CCDS DB by Nucleotide ID:NM_001358261Re-query CCDS DB by Protein ID:NP_001345190Link to BLAST:NP_001345190.1
Original member NCBI NM_028637.2 NP_082913.1 Updated not alive Link to Nucleotide Sequence:NM_028637.2Link to Protein Sequence:NP_082913.1Re-query CCDS DB by Nucleotide ID:NM_028637Re-query CCDS DB by Protein ID:NP_082913
Current member NCBI NM_028637.3 NP_082913.1 Accepted alive Link to Nucleotide Sequence:NM_028637.3Link to Protein Sequence:NP_082913.1Re-query CCDS DB by Nucleotide ID:NM_028637Re-query CCDS DB by Protein ID:NP_082913Link to BLAST:NP_082913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345189.1 206 Q9D112 206 100% 0 0
NP_001345190.1 206 Q9D112 206 100% 0 0
NP_082913.1 206 Q9D112 206 100% 0 0

Chromosomal Locations for CCDS 50727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132691954 132692131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132750213 132750655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (621 nt):
ATGGAATCCCAGGCAGCCACACCCAGCAGCCTGTCAGGAGAGAGCTGTACCTTGGATCTACCCGCGGTGT
GTGACACCAGCAGTTATGAAGCATCCCAGAGAGTCAGCCAGGGAAGCAGCAACTCTCTGAGTTCTCTGGA
ATCCCATCCTTTCCTTTCTTCTTCGACTACTGATCCAGATAGCAATTCTCTAAATACTGAGCAAAAAGGC
TCCTGGGACTCTGAGAACTTCTGGCTTGATCCTTCTTCGAAAGGCCAGTTGGAGACCAATGAAGAAGAGG
ATGGACTTCGGAAATCCCTGGATAGATTCTATGAAGCATTTGCCCATCCACTGCCAGGCTCTGGGGATCC
GCTCTCTGCATCTGTGTGTCAGTGCTTGTCTCAGACAATCTCTGAGCTCGAGGGCCAGGAGAGCCAAAGG
TATGCTCTCCGCAGTTTCCAAATGGCCCAGGTCATCTTCAGCCGGGATGGCTGCTCTATCTTACAGCGAC
ATTCCAGGGACACACGCTTTTACCCACTAGAGCAAGAAGGCAGCTCTGTAGATGATGAAGAGCCCACCCC
AGGACTGTCAAGAGAGGTCATTCGTTTCCTCTTGGAGCAGACTGTAATGAAAGACTCGTAG

Translation (206 aa):
MESQAATPSSLSGESCTLDLPAVCDTSSYEASQRVSQGSSNSLSSLESHPFLSSSTTDPDSNSLNTEQKG
SWDSENFWLDPSSKGQLETNEEEDGLRKSLDRFYEAFAHPLPGSGDPLSASVCQCLSQTISELEGQESQR
YALRSFQMAQVIFSRDGCSILQRHSRDTRFYPLEQEGSSVDDEEPTPGLSREVIRFLLEQTVMKDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH