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Report for CCDS50709.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50709.1 Public Mus musculus 2 Ebf4 23 108 98 CCDS HistoryNCBI Gene:228598Re-query CCDS DB by CCDS ID:50709.1Re-query CCDS DB by GeneID:228598See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50709.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110286.7 ENSMUSP00000105915.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110286.7Link to Ensembl Protein Viewer:ENSMUSP00000105915.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110286Re-query CCDS DB by Protein ID:ENSMUSP00000105915
Original member Current member NCBI NM_001110513.1 NP_001103983.1 Accepted alive Link to Nucleotide Sequence:NM_001110513.1Link to Protein Sequence:NP_001103983.1Re-query CCDS DB by Nucleotide ID:NM_001110513Re-query CCDS DB by Protein ID:NP_001103983Link to BLAST:NP_001103983.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103983.1 599 Q8K4J2-1 599 100% 0 0

Chromosomal Locations for CCDS 50709.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130296013 130296149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130306408 130306564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130306801 130306864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130306999 130307054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130308553 130308626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130309673 130309741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130358775 130358856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130359569 130359686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130359771 130359904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130360004 130360130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130361618 130361706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130361829 130361894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130361990 130362161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130362246 130362431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130365460 130365657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130369438 130369508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1800 nt):
ATGTTCCCCGCACAGGACGCTCTGCCCCGCGGTGGGCTCCATCTGAAAGAGGAGCCGCTGCTGCCCTCCA
GCCTGGGCTCGGTGCGCTCCTGGATGCAGAGCGCGGGCATCCTGGACTCCAACACCGCGGCGCAGAGTGG
CGTGGGCCTGGCAAGAGCACATTTTGAAAAGCAGCCCCCCTCCAACCTCAGGAAGTCCAACTTCTTCCAC
TTCGTGCTGGCCATGTACGACCGGCAGGGGCAGCCCGTGGAGGTGGAGCGCACAGCCTTCATCGACTTCG
TGGAAAAGGATCGAGAGCCTGGGACGGAAAAGACAAACAACGGGATCCATTACCGCCTTCGGCTGGTGTA
TAATAATGGACTTCGGACAGAGCAAGACCTCTACGTGCGCCTTATTGACTCCATGTCGAAGCAGGCTATC
ATCTATGAGGGACAGGACAAGAATCCTGAGATGTGCCGAGTGCTGCTCACTCATGAGATCATGTGCAGCC
GGTGCTGTGACCGCAAGAGCTGTGGTAACCGGAATGAGACGCCTTCTGATCCAGTCATTATTGACAGGTT
CTTCCTCAAATTCTTTCTCAAATGCAACCAGAACTGCTTGAAGAATGCCGGGAATCCCCGAGACATGCGC
CGCTTCCAGGTGGTGGTGTCCACGACCGTGAGTGTGGATGGCCATGTGCTGGCTGTGTCGGACAACATGT
TTGTGCACAACAACTCCAAGCATGGACGCAGAGCCCGACGCCTGGACCCTTCTGAAGCTGCCACCCCCTG
CATCAAGGCCATCAGCCCAGGGGAGGGCTGGACCACGGGAGGCGCCACCGTCATTATCATCGGAGACAAC
TTCTTCGACGGGTTGCAGGTCGTGTTTGGCAACGTGCTCCTGTGGAGCGAGCTCATCACTCCCCATGCTA
TCCGGGTGCAGACACCACCCCGACACATCCCTGGGGTAGTAGAAGTGACCCTCTCCTACAAGTCCAAGCA
GTTCTGTAAAGGAGCCCCTGGCCGCTTTGTCTACACAGCCCTGAATGAACCCACCATTGACTACGGATTC
CAGAGGCTCCAGAAAGTTATTCCCAGACACCCCGGAGACCCTGAGAGGCTACCCAAGGAAGTGCTGCTGA
AAAGGGCGGCTGACTTGGCGGAGGCCCTGTACGGAGTGCCCAGCAGTAACCAGGAGCTCCTCCTGAAACG
TGCGGCGGACGTGGCCGAGGCTCTGTACAGCGCCCCGCGCGCGCCTGCACCACTCGGACCCCTGGCCCCC
AGCCACCCGCACCCCGCCGTCGTGGGTATCAATGCCTTCAGCAGCCCTCTGGCCATCGCCGTCGGGGATA
CCACACCGGAGCCGGGCTATGCCCGTAGCTGCGGCAGCGCGTCTCCCCGGTTCGCGCCCAGCCCCGGCTC
TCAGCAGAGCAGCTATGGCAGTGGCCTTGGAGCCGGCCTCGGTAGCTATGGCGCGCCTGGTGTGACTGGC
CTTGGCGTGCCCGGGTCCCCTAGCTTCCTCAATGGCTCCACCGCAACCTCACCTTTCGCCATCATGCCCT
CTAGCCCCCCGCTGGCGGCTGCCTCCTCCATGTCCCTTCCGGCCGCCGCCCCCACCACCAGCGTCTTCTC
CTTCTCGCCTGTCAACATGATCTGCGCTGTCAAGCAGAGGAGCGCCTTCGCCCCTGTGCTGCGCCCACCC
AGTTCCCCATCGCAGGCCTGCCCCAGAGCCCACAGAGAGGGGCTTCCAGACCAGCCTTTTGAAGATACTG
ACAAGTTCCACTCTGCAGCCCGGGGACTCCAGGGCTTGGCATACTCCTAA

Translation (599 aa):
MFPAQDALPRGGLHLKEEPLLPSSLGSVRSWMQSAGILDSNTAAQSGVGLARAHFEKQPPSNLRKSNFFH
FVLAMYDRQGQPVEVERTAFIDFVEKDREPGTEKTNNGIHYRLRLVYNNGLRTEQDLYVRLIDSMSKQAI
IYEGQDKNPEMCRVLLTHEIMCSRCCDRKSCGNRNETPSDPVIIDRFFLKFFLKCNQNCLKNAGNPRDMR
RFQVVVSTTVSVDGHVLAVSDNMFVHNNSKHGRRARRLDPSEAATPCIKAISPGEGWTTGGATVIIIGDN
FFDGLQVVFGNVLLWSELITPHAIRVQTPPRHIPGVVEVTLSYKSKQFCKGAPGRFVYTALNEPTIDYGF
QRLQKVIPRHPGDPERLPKEVLLKRAADLAEALYGVPSSNQELLLKRAADVAEALYSAPRAPAPLGPLAP
SHPHPAVVGINAFSSPLAIAVGDTTPEPGYARSCGSASPRFAPSPGSQQSSYGSGLGAGLGSYGAPGVTG
LGVPGSPSFLNGSTATSPFAIMPSSPPLAAASSMSLPAAAPTTSVFSFSPVNMICAVKQRSAFAPVLRPP
SSPSQACPRAHREGLPDQPFEDTDKFHSAARGLQGLAYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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