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Report for CCDS50681.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50681.1 Public Mus musculus 2 Snap23 23 108 98 CCDS HistoryNCBI Gene:20619Re-query CCDS DB by CCDS ID:50681.1Re-query CCDS DB by GeneID:20619See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50681.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000116437.7 ENSMUSP00000112138.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116437.7Link to Ensembl Protein Viewer:ENSMUSP00000112138.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000116437Re-query CCDS DB by Protein ID:ENSMUSP00000112138
Original member NCBI NM_001177792.1 NP_001171263.1 Updated not alive Link to Nucleotide Sequence:NM_001177792.1Link to Protein Sequence:NP_001171263.1Re-query CCDS DB by Nucleotide ID:NM_001177792Re-query CCDS DB by Protein ID:NP_001171263
Current member NCBI NM_001177792.2 NP_001171263.1 Accepted alive Link to Nucleotide Sequence:NM_001177792.2Link to Protein Sequence:NP_001171263.1Re-query CCDS DB by Nucleotide ID:NM_001177792Re-query CCDS DB by Protein ID:NP_001171263Link to BLAST:NP_001171263.1

Chromosomal Locations for CCDS 50681.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120584309 120584365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120585151 120585192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120585556 120585604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120586159 120586276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120590663 120590695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120594801 120594956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120596643 120596787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120599276 120599341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGATAATCTGTCCCCAGAGGAAGTTCAGCTGCGGGCTCACCAGGTTACTGATGAGTCTCTGGAAAGCA
CAAGGAGAATCCTGGGTTTAGCCATTGAGTCTCAGGATGCAGGAATCAAGACCATCACTATGCTGGATGA
GCAAGGGGAACAACTAAATCGCATAGAAGAAGGCATGGACCAAATAAATAAAGACATGAGAGAGGCAGAG
AAGACTTTAACAGAACTCAACAAGTGTTGTGGCCTCTGCATCTGCCCTTGTAATAGATTCTCAGTTGGTG
ACTGTTTCTTTGAAACCAGGACAAAGAACTTTGAGTCTGGAAAGAACTATAAGGCAACATGGGGAGATGG
TGGCGACAACTCACCTAGCAATGTAGTATCTAAGCAACCGAGCCGGATTACAAATGGTCAGCCTCAGCAA
ACTACAGGAGCAGCCAGTGGTGGATACATTAAACGTATAACTAATGATGCCAGAGAAGATGAGATGGAAG
AGAACCTGACTCAAGTGGGCAGCATCCTAGGCAACCTAAAGAACATGGCTCTGGATATGGGCAATGAAAT
TGATGCTCAAAACCAGCAAATACAGAAGATCACAGAAAAGGCTGACACCAACAAGAATCGTATTGACATT
GCCAATACAAGAGCAAAGAAACTCATTGATAGTTAA

Translation (221 aa):
MDNLSPEEVQLRAHQVTDESLESTRRILGLAIESQDAGIKTITMLDEQGEQLNRIEEGMDQINKDMREAE
KTLTELNKCCGLCICPCNRFSVGDCFFETRTKNFESGKNYKATWGDGGDNSPSNVVSKQPSRITNGQPQQ
TTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKNMALDMGNEIDAQNQQIQKITEKADTNKNRIDI
ANTRAKKLIDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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