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Report for CCDS50519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50519.1 Public Mus musculus 2 Il36rn 23 108 98 CCDS HistoryNCBI Gene:54450Re-query CCDS DB by CCDS ID:50519.1Re-query CCDS DB by GeneID:54450See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50519.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028360.7 ENSMUSP00000028360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028360.7Link to Ensembl Protein Viewer:ENSMUSP00000028360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000028360Re-query CCDS DB by Protein ID:ENSMUSP00000028360
Original member Current member EBI ENSMUST00000114490.6 ENSMUSP00000110134.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114490.6Link to Ensembl Protein Viewer:ENSMUSP00000110134.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114490Re-query CCDS DB by Protein ID:ENSMUSP00000110134
Original member Current member EBI ENSMUST00000168941.7 ENSMUSP00000126028.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168941.7Link to Ensembl Protein Viewer:ENSMUSP00000126028.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168941Re-query CCDS DB by Protein ID:ENSMUSP00000126028
Original member NCBI NM_001146087.1 NP_001139559.1 Updated not alive Link to Nucleotide Sequence:NM_001146087.1Link to Protein Sequence:NP_001139559.1Re-query CCDS DB by Nucleotide ID:NM_001146087Re-query CCDS DB by Protein ID:NP_001139559
Current member NCBI NM_001146087.2 NP_001139559.1 Accepted alive Link to Nucleotide Sequence:NM_001146087.2Link to Protein Sequence:NP_001139559.1Re-query CCDS DB by Nucleotide ID:NM_001146087Re-query CCDS DB by Protein ID:NP_001139559Link to BLAST:NP_001139559.1
Original member NCBI NM_001146088.1 NP_001139560.1 Updated not alive Link to Nucleotide Sequence:NM_001146088.1Link to Protein Sequence:NP_001139560.1Re-query CCDS DB by Nucleotide ID:NM_001146088Re-query CCDS DB by Protein ID:NP_001139560
Current member NCBI NM_001146088.2 NP_001139560.1 Accepted alive Link to Nucleotide Sequence:NM_001146088.2Link to Protein Sequence:NP_001139560.1Re-query CCDS DB by Nucleotide ID:NM_001146088Re-query CCDS DB by Protein ID:NP_001139560Link to BLAST:NP_001139560.1
Original member Current member NCBI NM_019451.2 NP_062324.2 Accepted alive Link to Nucleotide Sequence:NM_019451.2Link to Protein Sequence:NP_062324.2Re-query CCDS DB by Nucleotide ID:NM_019451Re-query CCDS DB by Protein ID:NP_062324Link to BLAST:NP_062324.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139559.1 156 Q9QYY1 156 100% 0 0
NP_001139560.1 156 Q9QYY1 156 100% 0 0
NP_062324.2 156 Q9QYY1 156 100% 0 0

Chromosomal Locations for CCDS 50519.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 24277499 24277530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24279662 24279747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24280811 24280938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 24281148 24281372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGATGGTTCTGAGTGGGGCACTATGCTTCCGAATGAAGGATTCAGCCTTGAAGGTACTGTATCTGCACA
ATAACCAGCTGCTGGCTGGAGGACTGCACGCAGAGAAGGTCATTAAAGGTGAGGAGATCAGTGTTGTCCC
AAATCGGGCACTGGATGCCAGTCTGTCCCCTGTCATCCTGGGCGTTCAAGGAGGAAGCCAGTGCCTATCT
TGTGGGACAGAGAAAGGGCCAATTCTGAAACTTGAGCCAGTGAACATCATGGAGCTCTACCTCGGGGCCA
AGGAATCAAAGAGCTTCACCTTCTACCGGCGGGATATGGGTCTTACCTCCAGCTTCGAATCCGCTGCCTA
CCCAGGCTGGTTCCTCTGCACCTCACCGGAAGCTGACCAGCCTGTCAGGCTCACTCAGATCCCTGAGGAC
CCCGCCTGGGATGCTCCCATCACAGACTTCTACTTTCAGCAGTGTGACTAG

Translation (156 aa):
MMVLSGALCFRMKDSALKVLYLHNNQLLAGGLHAEKVIKGEEISVVPNRALDASLSPVILGVQGGSQCLS
CGTEKGPILKLEPVNIMELYLGAKESKSFTFYRRDMGLTSSFESAAYPGWFLCTSPEADQPVRLTQIPED
PAWDAPITDFYFQQCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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