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Report for CCDS50224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50224.1 Public Mus musculus 18 Cabyr 23 108 98 CCDS HistoryNCBI Gene:71132Re-query CCDS DB by CCDS ID:50224.1Re-query CCDS DB by GeneID:71132See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50224.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119108.7 ENSMUSP00000113760.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119108.7Link to Ensembl Protein Viewer:ENSMUSP00000113760.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119108Re-query CCDS DB by Protein ID:ENSMUSP00000113760
Original member Current member NCBI NM_001042419.1 NP_001035884.1 Accepted alive Link to Nucleotide Sequence:NM_001042419.1Link to Protein Sequence:NP_001035884.1Re-query CCDS DB by Nucleotide ID:NM_001042419Re-query CCDS DB by Protein ID:NP_001035884Link to BLAST:NP_001035884.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035884.1 220 Q9D424-3 220 100% 0 0

Chromosomal Locations for CCDS 50224.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 12744517 12744664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12744756 12744809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12750660 12751004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 12754344 12754459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGATTTCTTCAAAGCCCAGACTTGTTGTACCCTATGGCCTCAAGACTCTGCTTGAGGGAGTTAGCAGAG
CCATTCTCAAAACCAATCCAACAAACATCACCCAGTTTGCAGCCGTTTATTTTAAAGAACTCATTGTGTT
TAGAGAAGGGAATTCGTCTCTAGATATAAAAGATCTGATTAAACAGTTTCACCAGATGAAAGTAGAGAAA
TGGGCAGAAGGAGTGACAGTGGAGAAGAAAGAATGTATCAAGGAACCCATAAAACCACCTCCAGTTCCCT
GCAAACCCACACATATGGAAAAATCCACAGACACAGAGGAGGACAATGTAGCTGGACCACTATTTAGCAA
CAAAACCACTCAGTTTCCATCAGTTCATGCTGAAGTACAGTCTGAGGAGACAAGTGAAGGAGCTCGGGGT
CCCTCTGACAAACCGACTACTCCTAAGACCGACTACACCCCACCCTCGTCACCACCTCCAGCGCCTGTCT
CTGCCGAGTACGCTTATGTCCCAGCTGACCCAGCTCAGTTTGCCGCTCAGATGTTAGAAGATGTAGCTAA
AAAGAGTTCAGGATCTGGTGACAAACGTACTCCCTTTGGAAGTTATGGTATTGCTGGCGAAATTACTGTG
ACTACTGCCCATGTCCGCAGAGCAGAACCTTAA

Translation (220 aa):
MISSKPRLVVPYGLKTLLEGVSRAILKTNPTNITQFAAVYFKELIVFREGNSSLDIKDLIKQFHQMKVEK
WAEGVTVEKKECIKEPIKPPPVPCKPTHMEKSTDTEEDNVAGPLFSNKTTQFPSVHAEVQSEETSEGARG
PSDKPTTPKTDYTPPSSPPPAPVSAEYAYVPADPAQFAAQMLEDVAKKSSGSGDKRTPFGSYGIAGEITV
TTAHVRRAEP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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