NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49954.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49954.1 Reviewed, withdrawal pending Mus musculus 17 Tcte2 23 108 98 CCDS HistoryNCBI Gene:21646Re-query CCDS DB by CCDS ID:49954.1Re-query CCDS DB by GeneID:21646See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 49954.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000148430.1 ENSMUSP00000114746.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000148430.1Link to Ensembl Protein Viewer:ENSMUSP00000114746.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000148430Re-query CCDS DB by Protein ID:ENSMUSP00000114746
Original member NCBI NM_022311.3 NP_071706.2 Removed not alive Link to Nucleotide Sequence:NM_022311.3Link to Protein Sequence:NP_071706.2Re-query CCDS DB by Nucleotide ID:NM_022311Re-query CCDS DB by Protein ID:NP_071706Link to BLAST:NP_071706.2

Chromosomal Locations for CCDS 49954.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 13717488 13717633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 13727922 13728015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (240 nt):
ATGCCGGGACAGCTAAAGCCAAGTTTACAGCAGAGCCTGGCACAGTACCCGAACCACAAGGAGATAGCAG
CTACTGTGATTGGACACGTTCAAGTGATACCATGCTCCAGGGAAGGCTTCGACGTGACTCATCACAGCAC
TTGGCACGGAGTAACTCAACTAACATCTGTTGGAGGGATGAATAATTTAGGGGATCCCGAGAAGGCCACT
CGGAGGCTTGGCAGCCAGGTTAGCGACTGA

Translation (79 aa):
MPGQLKPSLQQSLAQYPNHKEIAATVIGHVQVIPCSREGFDVTHHSTWHGVTQLTSVGGMNNLGDPEKAT
RRLGSQVSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH