NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49885.1 Public Mus musculus 16 Cadm2 23 108 98 CCDS HistoryNCBI Gene:239857Re-query CCDS DB by CCDS ID:49885.1Re-query CCDS DB by GeneID:239857See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120898.7 ENSMUSP00000113178.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120898.7Link to Ensembl Protein Viewer:ENSMUSP00000113178.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120898Re-query CCDS DB by Protein ID:ENSMUSP00000113178
Original member Current member NCBI NM_001145977.1 NP_001139449.1 Accepted alive Link to Nucleotide Sequence:NM_001145977.1Link to Protein Sequence:NP_001139449.1Re-query CCDS DB by Nucleotide ID:NM_001145977Re-query CCDS DB by Protein ID:NP_001139449Link to BLAST:NP_001139449.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139449.1 395 Q8BLQ9-3 395 100% 0 0

Chromosomal Locations for CCDS 49885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 66663093 66663211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66664381 66664506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66747199 66747377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66771607 66771697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66784717 66784887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66812730 66812867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66815309 66815461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 66882733 66882882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67620171 67620231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGATTTGGAAACGCAGCGCGGTTCTCCGCTTCTACAGTGTCTGCGGGCTCCTGTTACAAGGCAGCCAAG
GGCAGTTTCCACTAACTCAGAATGTCACGGTTGTTGAAGGTGGAACTGCAATTTTGACCTGCAGAGTTGA
TCAAAATGATAACACCTCCCTCCAGTGGTCAAATCCAGCTCAACAGACTCTGTACTTCGATGACAAGAAA
GCTTTAAGGGACAATCGGATCGAGCTGGTTCGCGCTTCTTGGCATGAGTTGAGCATCAGTGTCAGTGATG
TGTCTCTCTCGGATGAAGGACAGTACACCTGCTCCTTATTTACAATGCCTGTCAAAACTTCCAAGGCCTA
TCTCACTGTCCTGGGTGTTCCGGAGAAGCCTCAGATTAGTGGATTTTCGTCACCCGTCATGGAGGGAGAC
CTGATGCAGCTGACGTGTAAGACGTCCGGCAGTAAGCCTGCGGCTGATATAAGATGGTTCAAAAATGACA
AAGAAATCAAAGATGTGAAGTACTTGAAAGAGGAGGATGCTAACCGAAAGACCTTCACCGTTAGCAGCAC
GCTGGATTTCCGAGTGGACCGTAGCGATGATGGAGTGGCGGTCATCTGCAGAGTAGACCATGAGTCCCTC
AATGCCACCCCTCAGGTAGCCATGCAGGTGCTAGAAATTCACTATACACCATCAGTTAAGATTATACCAT
CGACTCCTTTTCCACAAGAAGGGCAGGCTTTAACGTTGACCTGTGAATCTAAAGGAAAACCACTGCCAGA
ACCTGTTTTGTGGACGAAAGATGGTGCCGAATTACCAGATCCTGATCGAATGGTTGTGAGTGGTAGGGAA
CTCAACATTCTCTTCCTGAACAAAACGGACAATGGCACTTACCGATGTGAAGCCACTAACACCATTGGCC
AAAGCAGTGCCGAGTATGTCCTCATTGTTCACGATCCCAATTCTCTGGCTGGCCAGAATGGCCCTGACCA
TGCTCTCATCGGAGGAATAGTGGCTGTTGTTGTATTTGTTACACTGTGCTCCATATTCCTGCTTGGCCGA
TATCTGGCAAGACATAAAGGAACATATCTAACAAATGAAGCTAAAGGAGCCGAAGATGCACCAGATGCCG
ACACAGCCATTATCAATGCTGAAGGCAGCCAAGTCAATGCCGAAGAGAAAAAAGAGTATTTCATTTAA

Translation (395 aa):
MIWKRSAVLRFYSVCGLLLQGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKK
ALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVPEKPQISGFSSPVMEGD
LMQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAVICRVDHESL
NATPQVAMQVLEIHYTPSVKIIPSTPFPQEGQALTLTCESKGKPLPEPVLWTKDGAELPDPDRMVVSGRE
LNILFLNKTDNGTYRCEATNTIGQSSAEYVLIVHDPNSLAGQNGPDHALIGGIVAVVVFVTLCSIFLLGR
YLARHKGTYLTNEAKGAEDAPDADTAIINAEGSQVNAEEKKEYFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH