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Report for CCDS49834.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49834.1 Public Mus musculus 16 Slc12a8 23 108 98 CCDS HistoryNCBI Gene:171286Re-query CCDS DB by CCDS ID:49834.1Re-query CCDS DB by GeneID:171286See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49834.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059056.14 ENSMUSP00000062337.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059056.14Link to Ensembl Protein Viewer:ENSMUSP00000062337.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000059056Re-query CCDS DB by Protein ID:ENSMUSP00000062337
Original member Current member EBI ENSMUST00000121925.7 ENSMUSP00000112439.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121925.7Link to Ensembl Protein Viewer:ENSMUSP00000112439.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121925Re-query CCDS DB by Protein ID:ENSMUSP00000112439
Original member Current member NCBI NM_001370999.1 NP_001357928.1 Accepted alive Link to Nucleotide Sequence:NM_001370999.1Link to Protein Sequence:NP_001357928.1Re-query CCDS DB by Nucleotide ID:NM_001370999Re-query CCDS DB by Protein ID:NP_001357928Link to BLAST:NP_001357928.1
Original member Current member NCBI NM_134251.3 NP_599012.2 Accepted alive Link to Nucleotide Sequence:NM_134251.3Link to Protein Sequence:NP_599012.2Re-query CCDS DB by Nucleotide ID:NM_134251Re-query CCDS DB by Protein ID:NP_599012Link to BLAST:NP_599012.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357928.1 705 Q8VI23-1 705 100% 0 0
NP_599012.2 705 Q8VI23-1 705 100% 0 0

Chromosomal Locations for CCDS 49834.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 33518329 33518376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33534864 33535010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33540852 33541043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33550883 33551114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33590252 33590365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33606166 33606253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33608145 33608232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33617108 33617254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33624554 33625175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33646563 33646660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33649818 33649935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33658197 33658257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 33662925 33663087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2118 nt):
ATGGCCCAGAGGTCTCCGCAAGAACTCTTCCACGAGGCAGCCCAGCAGGGCATCCTGGCCCAGCCCCAGC
CCTGGTGGAAGATCCAGCTGTTCATGTGGGAGCCGGTGCTGTTTGGGACCTGGGATGGTGTGTTCACATC
CTGCATGATCAACATTTTTGGCGTTGTCCTTTTCTTGAGGACCGGCTGGCTGGTGGGAAACACAGGTGTG
CTCCTGGGCTTGCTCCTGGTGTCCTTCGTCGTCCTCGTGGCCCTCATCACCGTGCTGTCGGGCATTGGTG
TCGCAGAGCATGGCGGGATCAGCAGTGGCGGTGTCTACTCCATGATCTCCTCGGTGCTTGGTGGGCAGAT
GGGAGGCACTGTGGGGCTGCTCTATGTATTTGGACAGTGTGTTGCAGGTGCTATGTACATCACCGGCTTT
GCGGAGTCCATCTCAGATCTGCTGGGACTTGGGGACATCTGGGCAGTGCGTGGAATTTCAGTTGCTGTGC
TTCTGGCTTTGCTGGGCATCAACCTGGCAGGTGTCAAGTGGATTATCCGCCTCCAGCTGCTGCTGCTGCT
CCTGCTGGCTGTCTCGACCCTGGACTTTGTGGTGGGCTCTTTCACCCACCTGGACCCAGAACATGGCTTT
ATTGGCTACTCCCCAGAACTGCTACAGAGCAACATTCTGCCAGAGTACAGCCCCGGGGAGTCATTCTTCA
CTGTGTTTGGGGTGTTCTTCCCTGCAGCTACAGGAGTCATGGCTGGCTTCAACATGGGAGGAGACCTGAG
AGACCCTGCTGACAGTGTCCCCTTAGGCTCCCTAGCAGCTGTTGGCGTCTCGTGGTTTCTCTACATCATC
TTTGCCTTCCTGCTTGGTGCCGTCTGTACCCGAGAGGCCCTCCGCTCTGACTTCCTGATAGCTGAAAAGG
TGTCTCTGGTTGGTTTCCTCTTCCTATTGGGCCTGTACATCTCATCCCTGGCTTCCTGTATGGGGGGACT
CTATGGCGCACCCCGGATCCTGCAGTGCATCGCCCAGGACAAAGTCATCCCTGCACTCGCCTTTCTGGCG
AATGGGAAAGGGCCAAATAAAACACCGGTAGCAGCCATCTGCCTGACCAGCTTGGTGACCATGGCCTTTG
TCCTGGTGGGTCAGGTGAATGTTCTGGCGCCCGTTGTCACCATCAATTTCATGCTGACCTACATCATGGT
GGACTACTCTTACTTCGCCCTCTCCATGGCTCACTGTGGCCTCGCCCCATCTCCTGAGCCCGTCCCCAGA
CAAGGCCCAGATACTCTGCACTGCTCTGAGCACCTGCTCCAGGACAGGGCTCCCAGCTACGGCTCTGATG
TCCCTGCCAGAAGCCTCTCTGAGGGCACCCTGCTGGAGTTCACCAAGGACATGGATCAGTTCCTCCAGCC
AATAGAGGAACTGGAGAGTCGTCAGCTTGGGTCAAGAGAAGGAAACAACCCAAAGAATCAGAAGCGCAAG
GGTAAGAAAGGCGCCAAGCAAACCCTACAAGATAGCTTCCTCTTGGACCCTGGGTCTCCTTTGTCCTTTC
CTACGAGGACTTCTGAGAGGTTGTCTGTTGCCTTCTGTGGGGAGCAAGAGTCCTATCAGAAGCAGCAGAC
TTCTAGGAGTGAATCACATGACCATCTTGTTCCTGATCTACGCAACCAGCCTAGAGTGAACAGAGAAGAT
TTCTTTCTGAAATGCAGACTTCAGGAACAAGAGATCCAGAGAAGACCAAGTGTTTTCTATGCTTGCATGT
GTAACCCCTGGGTCTCCCTGTTAGGGGCTCTTGCATCCCTGCTCATCATGTTTGTGATCCAGTGGCTCTA
TACCCTAGCTAGTATGGGTGTTGCTGCCCTTGTGTATTTCTACATTGGCCAGGCAAGTCCAGGCCTTTAC
CTCGGATCAGCATCAAACTTCAGCTTTTTCCAATGGATGAAGTCCTTCTTGGTCCCCTCCTGCAGGAGCC
TGAGGTCCGCCCAGGAGCAAATCATCTTGGCGCCATCACCAGCCAAGGTTGACATGGCAATGACTCAGCT
TACCCAGGACAATGCAGACTTCGCCACCCGAGATCGTTACCACCACTCCTCCTTCCTGAGCCGGGAGCAG
TTGATGCCTCCCTACTAG

Translation (705 aa):
MAQRSPQELFHEAAQQGILAQPQPWWKIQLFMWEPVLFGTWDGVFTSCMINIFGVVLFLRTGWLVGNTGV
LLGLLLVSFVVLVALITVLSGIGVAEHGGISSGGVYSMISSVLGGQMGGTVGLLYVFGQCVAGAMYITGF
AESISDLLGLGDIWAVRGISVAVLLALLGINLAGVKWIIRLQLLLLLLLAVSTLDFVVGSFTHLDPEHGF
IGYSPELLQSNILPEYSPGESFFTVFGVFFPAATGVMAGFNMGGDLRDPADSVPLGSLAAVGVSWFLYII
FAFLLGAVCTREALRSDFLIAEKVSLVGFLFLLGLYISSLASCMGGLYGAPRILQCIAQDKVIPALAFLA
NGKGPNKTPVAAICLTSLVTMAFVLVGQVNVLAPVVTINFMLTYIMVDYSYFALSMAHCGLAPSPEPVPR
QGPDTLHCSEHLLQDRAPSYGSDVPARSLSEGTLLEFTKDMDQFLQPIEELESRQLGSREGNNPKNQKRK
GKKGAKQTLQDSFLLDPGSPLSFPTRTSERLSVAFCGEQESYQKQQTSRSESHDHLVPDLRNQPRVNRED
FFLKCRLQEQEIQRRPSVFYACMCNPWVSLLGALASLLIMFVIQWLYTLASMGVAALVYFYIGQASPGLY
LGSASNFSFFQWMKSFLVPSCRSLRSAQEQIILAPSPAKVDMAMTQLTQDNADFATRDRYHHSSFLSREQ
LMPPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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