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Report for CCDS49333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49333.1 Public Mus musculus 13 Sv2c 23 108 98 CCDS HistoryNCBI Gene:75209Re-query CCDS DB by CCDS ID:49333.1Re-query CCDS DB by GeneID:75209See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49333.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161263.7 ENSMUSP00000124473.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161263.7Link to Ensembl Protein Viewer:ENSMUSP00000124473.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161263Re-query CCDS DB by Protein ID:ENSMUSP00000124473
Original member Current member NCBI NM_029210.1 NP_083486.1 Accepted alive Link to Nucleotide Sequence:NM_029210.1Link to Protein Sequence:NP_083486.1Re-query CCDS DB by Nucleotide ID:NM_029210Re-query CCDS DB by Protein ID:NP_083486Link to BLAST:NP_083486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083486.1 727 Q69ZS6 727 100% 0 0

Chromosomal Locations for CCDS 49333.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 95961280 95961463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95975988 95976147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95976600 95976803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95978041 95978174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95981838 95982002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95985930 95986018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95986716 95986826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95989091 95989180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 95989696 95989829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96030483 96030634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96048407 96048587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 96088220 96088799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGGAAGACTCCTACAAGGATAGGACTTCACTGATGAAGGGTGCCAAGGACATTGCCAAAGAGGTGAAGA
AGCAGACGGTGAAGAAGGTGAACCAGGCAGTGGATCGGGCCCAGGATGAATATACCCAGCGGTCCTACAG
TCGGTTCCAGGATGAAGAGGACGATGATGACTACTACCCACCTGGCGAAACCTACAGTGGGGAGGTCAAT
GATGATGAAGGCTCAAGTGAGGCCACTGAGGGTCACGACGAGGAGGATGAGATCTATGAAGGGGAGTACC
AGGGCATCCCCAGCACGAACCAGGGGAAAGACAGCATCGTGTCTGTAGGACAGCCCAAAGGTGATGAGTA
CAAGGACCGCAGAGAGCTAGAGTCAGAGAGGAGGGCTGATGAGGAAGAGCTCGCCCAGCAGTATGAGCTG
ATAATCCAAGAGTGTGGCCACGGCCGTTTCCAGTGGGCCCTTTTCTTCGTCCTGGGCATGGCTCTCATGG
CCGATGGCGTGGAGGTGTTTGTGGTGGGCTTCGTGCTACCCAGTGCAGAGACAGACCTATGCATACCAAA
TTCGGGATCTGGATGGCTAGGTAGCATAGTGTACCTCGGGATGATGGTGGGGGCGTTCTTCTGGGGAGGA
CTGGCAGACAAAGTAGGAAGGAAGCAGTCTCTTCTGATTTGCATGTCTGTCAACGGATTCTTTGCCTTCC
TCTCCTCATTTGTCCAAGGTTACGGCTTCTTTCTCGTCTGTCGGTTGCTTTCTGGATTCGGGATTGGAGG
CGCCATTCCCACTGTGTTCTCCTACTTCGCTGAAGTCCTGGCCCGGGAGAAGCGGGGTGAGCACCTCAGT
TGGCTCTGCATGTTCTGGATGATTGGCGGCATCTACGCCTCCGCCATGGCCTGGGCCATCATTCCCCACT
ACGGGTGGAGCTTCAGCATGGGTTCAGCCTACCAGTTCCACAGCTGGCGCGTCTTCGTCATCGTCTGTGC
GCTCCCGTGCGTCTCCTCTGTGGTGGCTCTCACCTTCATGCCAGAAAGCCCTCGGTTCTTGCTGGAGGTG
GGAAAACATGATGAAGCCTGGATGATTCTGAAGTTAATTCATGACACCAACATGAGAGCCCGGGGCCAGC
CAGAGAAGGTCTTCACGGTAAATAAAATCAAGACTCCCAAACAAATAGATGAGCTGATCGAAATTGAGAG
CGACACGGGAACCTGGTACAGGAGGTGTTTCGTTCGGATCCGCACCGAACTGTACGGAATTTGGCTGACA
TTCATGAGATGCTTCAACTACCCAGTCAGGGAAAACACCATCAAGCTTACGATTGTCTGGTTCACCCTGT
CCTTCGGGTACTATGGGTTGTCCGTTTGGTTCCCTGATGTCATTAAACATCTCCAGTCTGATGAGTATGC
ACTGCTAACTAGGAATGTGCAAAAGGATAAATATGCAAACTTCAGCATTAACTTTACCATGGAGAACCAG
ATCCACACTGGAATGGAATACGAGAACGGCAGATTCCTCGGAGTCAAGTTCAAATCGGTAACCTTCAAAG
ATTCAGTGTTTAAGTCCTGCACCTTTGACGACGTGACCTCAGTCAACACCTACTTCAAGAACTGCACGTT
TATTGATACCCTTTTTGATAACACAGATTTTGAGCCCTATAAATTCATAGACAGTGAATTTCAGAACTGC
TCATTTCTTCACAATAAGACGGGGTGCCAGATTACTTTTGATGACGACTATAGTGCCTACTGGATTTACT
TTGTCAACTTTCTTGGGACATTGGCAGTGTTGCCAGGAAATATCGTGTCTGCTCTCCTGATGGACAGGAT
CGGGCGTTTAACGATGCTAGGAGGCTCCATGGTGCTCTCCGGGATCAGTTGCTTCTTCCTGTGGTTTGGC
ACCAGCGAATCCATGATGATAGGCATGCTGTGCTTGTATAATGGGCTGACCATCTCAGCGTGGAATTCTC
TCGATGTCGTCACGGTGGAACTGTATCCCACAGACCGGAGAGCAACGGGCTTCGGCTTCTTGAACGCCCT
CTGTAAAGCGGCGGCCGTCCTGGGAAACTTAATCTTCGGCTCCTTGGTCAGCATCACCAAAGCCATCCCC
ATCCTGCTGGCTTCCACTGTGCTCGTGTGTGGAGGACTCGTGGGGCTGCGCCTGCCCGACACACGAACCC
AGGTTCTGATGTGA

Translation (727 aa):
MEDSYKDRTSLMKGAKDIAKEVKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEEDDDDYYPPGETYSGEVN
DDEGSSEATEGHDEEDEIYEGEYQGIPSTNQGKDSIVSVGQPKGDEYKDRRELESERRADEEELAQQYEL
IIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGWLGSIVYLGMMVGAFFWGG
LADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLVCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLS
WLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEV
GKHDEAWMILKLIHDTNMRARGQPEKVFTVNKIKTPKQIDELIEIESDTGTWYRRCFVRIRTELYGIWLT
FMRCFNYPVRENTIKLTIVWFTLSFGYYGLSVWFPDVIKHLQSDEYALLTRNVQKDKYANFSINFTMENQ
IHTGMEYENGRFLGVKFKSVTFKDSVFKSCTFDDVTSVNTYFKNCTFIDTLFDNTDFEPYKFIDSEFQNC
SFLHNKTGCQITFDDDYSAYWIYFVNFLGTLAVLPGNIVSALLMDRIGRLTMLGGSMVLSGISCFFLWFG
TSESMMIGMLCLYNGLTISAWNSLDVVTVELYPTDRRATGFGFLNALCKAAAVLGNLIFGSLVSITKAIP
ILLASTVLVCGGLVGLRLPDTRTQVLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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