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Report for CCDS49209.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49209.1 Public Mus musculus 13 Pgbd1 23 108 98 CCDS HistoryNCBI Gene:319207Re-query CCDS DB by CCDS ID:49209.1Re-query CCDS DB by GeneID:319207See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49209.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000122872.7 ENSMUSP00000120175.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122872.7Link to Ensembl Protein Viewer:ENSMUSP00000120175.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122872Re-query CCDS DB by Protein ID:ENSMUSP00000120175
Original member Current member NCBI NM_001012311.2 NP_001012311.2 Accepted alive Link to Nucleotide Sequence:NM_001012311.2Link to Protein Sequence:NP_001012311.2Re-query CCDS DB by Nucleotide ID:NM_001012311Re-query CCDS DB by Protein ID:NP_001012311Link to BLAST:NP_001012311.2

Chromosomal Locations for CCDS 49209.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 21422775 21423624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21433391 21433542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 21434351 21434485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1137 nt):
ATGCTCAGGAACTTTACCGCCTGCGATTTCGGCACTTCTGTTACCATGAGGCAGACATATCCTCTGCAGA
GAGGTGATGAAGCGGCGACATTACTGGAGAATCTAGCCTCGGAACGTGGAGACACAGGGCAGCAGGCTAC
TCTCTGTGCTCAGGAACAGGACATGCACCTAGTGGTGACAGAGTATCCAGGAGCCTCTATGGAGGAGTAT
CAGAGCCTCCATCTCCTGCAGTCTTCGGTCACTCCCTGGACAAGAGACTTTCCAGAGCTCCCCCTGGGAT
GTGAGAGAGATTCTCCTTCCCCCACTGAAAAGGCAGTCTCCACTTTGAACACTGTCGGGAGCTGCCACCC
ACCCCATGACTCCTGGGCCAAGATGCACATTGCGTCCTTGCAGTACATTACTCAGAAAGGGAGGGAAAAA
GCCAAATTTAGAGTGATCGAGCTGCTCCAAGGCCATGCGTTTTCTGATGAGTCAGAGACAGAGGAAGACA
ATGAGCCTGAGGTACAGCCTGAGAGAAAGAAGATAAAGGCATCCAGCATCCCTGAGAAGAGCTGGACCAA
ACGAGACAGTAAGCCTAACTTTCCAAGCTGGTCAGCCCTGGATTCTGGACTTTTGAATCTTAAGAGTGAG
AAGTTGAACCCAGTAGAGCTCTTTGAATTATTTTTTGATGGTGAAACATTCAACTTGATTGTCAATGAAA
CCAATAATTATGCTTCTCAGAAAAATGTCAGCCTAGAAGTCACAGTGCAGGAAATGAGGTGTGTGTTTGG
TGTTCTGCTCTGCAGTGGATTTGTAAGGCATCCCAGAATGGGGATGTATTGGGAAATCTCTGATTCTGAT
CAGACCCTGGTTAGAAATGAAATTAGAAGGGACAGATTTGAATTAATTTTCTCATGCCTGCATTTTGCAG
ATAATAAGCACCTCGATCAAAAAGATAAGTTTTCAAATTTGAGGCCTCTCATAAAGCAAATGAAAAATTT
TCCTCTTGTATGCCCCCCTGAGGAATACTATTGTTTTGACAAGTCAATGTGTGAATGCTTTGATTGTGAC
CAATTTCTGAATGGGAAGCCTCTTCAAATTGGCTATAAAATTTGGTGTGGTACAACTAACTACGCAAGGC
TATCTGGTTTGGTTTGA

Translation (378 aa):
MLRNFTACDFGTSVTMRQTYPLQRGDEAATLLENLASERGDTGQQATLCAQEQDMHLVVTEYPGASMEEY
QSLHLLQSSVTPWTRDFPELPLGCERDSPSPTEKAVSTLNTVGSCHPPHDSWAKMHIASLQYITQKGREK
AKFRVIELLQGHAFSDESETEEDNEPEVQPERKKIKASSIPEKSWTKRDSKPNFPSWSALDSGLLNLKSE
KLNPVELFELFFDGETFNLIVNETNNYASQKNVSLEVTVQEMRCVFGVLLCSGFVRHPRMGMYWEISDSD
QTLVRNEIRRDRFELIFSCLHFADNKHLDQKDKFSNLRPLIKQMKNFPLVCPPEEYYCFDKSMCECFDCD
QFLNGKPLQIGYKIWCGTTNYARLSGLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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