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Report for CCDS48773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48773.1 Public Mus musculus 11 Pwwp2a 23 108 98 CCDS HistoryNCBI Gene:70802Re-query CCDS DB by CCDS ID:48773.1Re-query CCDS DB by GeneID:70802See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094294.4 ENSMUSP00000091852.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094294.4Link to Ensembl Protein Viewer:ENSMUSP00000091852.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000094294Re-query CCDS DB by Protein ID:ENSMUSP00000091852
Original member NCBI NM_001164231.1 NP_001157703.1 Updated not alive Link to Nucleotide Sequence:NM_001164231.1Link to Protein Sequence:NP_001157703.1Re-query CCDS DB by Nucleotide ID:NM_001164231Re-query CCDS DB by Protein ID:NP_001157703
Current member NCBI NM_001164231.2 NP_001157703.1 Accepted alive Link to Nucleotide Sequence:NM_001164231.2Link to Protein Sequence:NP_001157703.1Re-query CCDS DB by Nucleotide ID:NM_001164231Re-query CCDS DB by Protein ID:NP_001157703Link to BLAST:NP_001157703.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157703.1 533 Q69Z61-2 533 100% 0 0

Chromosomal Locations for CCDS 48773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 43682093 43682616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43704534 43705477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43717030 43717149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 43720221 43720234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCGGCCGTGGCTGCTGAGGCGGCGGCGACCGCGGCGTCCCCCGGGGAAGGGGGCGCCGGCGAGGCCG
AGCCGGAGCTAGAGCCCATTCCCGGCAGCGAAGCCGGCACCCCCCTCCCGGTCACGGCCACGGAGGCGGC
GGTGCCGGACGGCGAGGCCGACGGGCGCCAGTCCGCCCCTCAGGCCGACGAGCAGCCGCTGCCGCCACCG
CCGCCGCCGCCGCCGCCGGGGGAGCTGGCCGATAGCTCCGAGGCTGAGGAGGCGAAGCCGCCCGAGCCCG
CGGCTGTCCCGGTCTCGCCGCCCGAGCAGCCTCCGGCCGCCCCCGAGCAGCCCGAGGACGCGCCGCGGCC
GCCACCAGCTCCGGCGCTCGTGCCGCCGGCGGGCGGGGACTCGGCGGTGTCGCACCTCATCCCCGGCTCG
GAGGTGCGGGTCACGCTGGACCACATCATCGAGGACGCGCTCGTCGTGTCGTTCCGCCTCGGGGAGAAGC
TCTTCTCCGGGGTCCTCATGGACCTATCCAAAAGGTTTGGGCCCCATGGGATCCCTGTGACAGTATTTCC
CAAAAGGGAATATAAGGACAAACCGGACGCCATGCAGCTCCAAAGTACCACATTCCAAGAAGGGATAGAA
GTCAAGCAGGAAGTGAACGGTGCTGTTCCCGATGACCTCTCTCCAGTCCCTCCTCCTGAGCGCCTGTGGG
CTTCCAAGCCACCTCCTCTCTTCCATGAAGGAGCACCTTACCCTCCCCCCTTGTTTATCAGGGACACATA
TAACCAATCAATACCTCAGCCGCCGCCTCGGAAAATTAAGCGACCCAAACGAAAAATGTACAGGGAAGAA
CCCACTTCAATAATGAATGCGATTAAGCTACGGCCCAGGCAAGTCCTGTGTGATAAGTGTAAAAACAGTG
TTGTTGCTGAAAAGAAGGAAATTAGGAAAGGTAGCAGTGACTCTTCTAGGTATGAAGATAAAAAACGGAG
AAATGACAGTGTAGCTACTGTGAACAAAAAACTGAAAACTGACCATAAAGTGGATGGGAAAAACCAAAAC
GAAAGCCAGAGAAGGAACACTGTGGTGAGGGTTTCCAGTATCGCTCACAGCAGGGGCAGAGTAGTCAAGG
TTTCTGCTCAGGCAAATACATCAAAAGCTCAGTTAAATACCAAGAAAGTGCTCCAAAGCAAGAACATGGA
TCACGCAAAAGCTCGGGAAGTATTGAAAATTGCCAAAGAAAAGGCACAGAAGAAGCAAAGTGAAACCTCC
ACTTCCAAAACCGCCCATGCGAAAGTCCACTTCACACGTCGGTATCAGAGTCCCAGCTCAGGTTCTCTCC
CACCCCGAGTGCGGTTAAAACCACAAAGGTACAGGAACGAAGAAAATGACTCTTCTCTGAAGACGGGACT
GGAGAAAATTCGGAGTGGCAAGCTGGCGCCTAAGCCGCAGTCTCGATGCACCTCCACCCGCTCAGCAGGT
CTCAACAAATGGCAGCTATTACATCAGACAGTGACGAGTCCTGCTGCTCCCTTACAGTGTCTGACAGACC
ACTGTGGATTCAGGCTGGGAGCATTGAAGTTAACAGTGAAGCGGGCAGCACAAAGGCATTAG

Translation (533 aa):
MAAVAAEAAATAASPGEGGAGEAEPELEPIPGSEAGTPLPVTATEAAVPDGEADGRQSAPQADEQPLPPP
PPPPPPGELADSSEAEEAKPPEPAAVPVSPPEQPPAAPEQPEDAPRPPPAPALVPPAGGDSAVSHLIPGS
EVRVTLDHIIEDALVVSFRLGEKLFSGVLMDLSKRFGPHGIPVTVFPKREYKDKPDAMQLQSTTFQEGIE
VKQEVNGAVPDDLSPVPPPERLWASKPPPLFHEGAPYPPPLFIRDTYNQSIPQPPPRKIKRPKRKMYREE
PTSIMNAIKLRPRQVLCDKCKNSVVAEKKEIRKGSSDSSRYEDKKRRNDSVATVNKKLKTDHKVDGKNQN
ESQRRNTVVRVSSIAHSRGRVVKVSAQANTSKAQLNTKKVLQSKNMDHAKAREVLKIAKEKAQKKQSETS
TSKTAHAKVHFTRRYQSPSSGSLPPRVRLKPQRYRNEENDSSLKTGLEKIRSGKLAPKPQSRCTSTRSAG
LNKWQLLHQTVTSPAAPLQCLTDHCGFRLGALKLTVKRAAQRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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