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Report for CCDS48718.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48718.1 Public Mus musculus 10 R3hdm2 23 108 98 CCDS HistoryNCBI Gene:71750Re-query CCDS DB by CCDS ID:48718.1Re-query CCDS DB by GeneID:71750See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48718.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170336.7 ENSMUSP00000128659.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170336.7Link to Ensembl Protein Viewer:ENSMUSP00000128659.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170336Re-query CCDS DB by Protein ID:ENSMUSP00000128659
Original member Current member NCBI NM_001168293.1 NP_001161765.1 Accepted alive Link to Nucleotide Sequence:NM_001168293.1Link to Protein Sequence:NP_001161765.1Re-query CCDS DB by Nucleotide ID:NM_001168293Re-query CCDS DB by Protein ID:NP_001161765Link to BLAST:NP_001161765.1
Original member Current member NCBI NM_001359244.1 NP_001346173.1 Accepted alive Link to Nucleotide Sequence:NM_001359244.1Link to Protein Sequence:NP_001346173.1Re-query CCDS DB by Nucleotide ID:NM_001359244Re-query CCDS DB by Protein ID:NP_001346173Link to BLAST:NP_001346173.1
Original member Current member NCBI NM_001359245.1 NP_001346174.1 Accepted alive Link to Nucleotide Sequence:NM_001359245.1Link to Protein Sequence:NP_001346174.1Re-query CCDS DB by Nucleotide ID:NM_001359245Re-query CCDS DB by Protein ID:NP_001346174Link to BLAST:NP_001346174.1

Chromosomal Locations for CCDS 48718.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 127444311 127444475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127451992 127452033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127452692 127452778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127454630 127454756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127457650 127457728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127458139 127458198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127458810 127458950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127459467 127459575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127464982 127465013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127465131 127465184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127471768 127472000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127476520 127476698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127481693 127481794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127483976 127484218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127484506 127484632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127484862 127485022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127485416 127485570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127487775 127487875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127492569 127492738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127495021 127495168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127497162 127497259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127497541 127497625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 127498369 127498709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3039 nt):
ATGTCTAACAGTAACACTACTCAGGAGACTCTGGAAATAATGAAAGAATCAGAAAAAAAACTGGTGGAAG
AATCTGTAAACAAAAATAAATTTATATCCAAAACTCCAAGTAAGGAAGACGTCGAGAAGGAGGGTGAAGA
GAATGGTCTGCGTCAGGAGACACAGAGACGGACATCCAGTCATGGCCATGCCAGGAAAAGAGCCAAGTCT
AATTCCAAACTCAAGTTGGTGCGCAGTCTGGCAGTCTGTGAGGAATCCTCCACTCCATTTGTCGATGGGC
CACTAGACACCCAGGATATAATTCAACTGCACATCAGCTGCCCCTCTGACAAGGAGGAAGAAAAGTCCAC
AAAAGATGTCTCTGAAAAGGAAGACAAGGACAAAAGCAAAGAAAAGGTCCCAAGGAAGATGCTATCCAGA
GACTCCAGCCAAGAATATACCGACTCCACTGGAATAGATCTACATGAATTTCTTGTAAATACACTGAAAA
AGAACCCAAGGGACAGAATGATGCTGCTAAAGTTAGAGCAAGAGATTCTGGACTTCATCAATGACAACAA
CAACCAGTTCAAGAAGTTCCCTCAGATGACCTCATATCACCGGATGCTATTACATCGGGTAGCTGCCTAC
TTTGGGATGGACCACAATGTTGATCAAACAGGGAAAGCTGTCATCATCAACAAAACCAGCAGCACGAGGA
TCCCTGAACAGAGGTTCTCAGAACATATAAAAGATGAAAAGAACACGGAATTTCAACAGAGGTTCATTCT
CAAGAGAGATGATGCCAGTATGGACCGAGATGATAACCAGACCGGCCAGAATGGATATCTGAATGACATC
AGACTCTCCAAAGAAGCCTTTTCTTCTAGCTCTCACAAGAGAAGGCAGATTTTTAGGGGAAACCGGGAAG
GGCTGAGCCGTACCTCAAGCAGCCGACAGAGCAGCACAGACAGCGAGCTCAAGTCCCTGGAGCCACGGCC
TTGGAGCAGCACAGACTCAGATGGCTCTGTCCGCAGCATGCGACCTCCTGTCACCAAAGCCAGCAGCTTC
AGTGGAATCTCCATCCTCACCCGAGGCGACAGCATTGGCAGCAGTAAAGGCGGCAGTGCAGGCAGGCTCT
CCAGGCCAGGCATGGCACTAGGTGCCCCAGAAGTGTGCAACCAGGTCACCTCACCCCAGTCTGTCCGGGG
CCTTCTTCCTTGTACTGCCCAGCAGCAGCAGCAGCAACAACAACAACAACAACAACTTCCTGCTCTCCCA
CCCACTCCTCAACACCAGCCACCCTTGAATAATCACATGATTTCACAGCCAGTCCCGGCCCTGCAGCCCT
CTCCACAGCCGGTTCAGTTTTCTCCAAGCTCCTGTCCCCAGGTCCTTCTGCCAGTCTCTCCGCCCCAGCA
GTACAACATGGCAGAAGACCTCAGCAACCCCTTTGGACAAATGAGCCTTAGCCGCCAAGGTTCTACTGAA
GCAGCTGACCCCTCCTCGGCTTTGTTCCAGCCCCCACTTATCTCCCAGCATCCTCAGCAAGCTAGTTTCA
TCATGGCTTCTGCAGGACAGCCCCTTCCCACTTCCAATTATTCCACTTCTAGCCATGCTCCACCTACCCA
GCAAGTCCTGCCACCCCAAGGCTACATGCAGCCCCCTCAACAGATCCAGGTTTCTTACTACCCTCCTGGA
CAGTATCCTAATTCCAACCAGCAATATCGACCTCTGTCTCACCCGGTGGCCTATAGCCCCCAGCGTGGTC
AACAGCTGCCTCAAGCATCCCAGCAGCCTGGCTTACAGCCCATGATGTCTAACCAGCAGCAGACGGCTTA
CCAAGGCATGCTTGGGGTCCAGCAGCCTCAGAACCAGGGCCTACTCAGCAACCAGAGGAGCAGCATGGGA
GGCCAGATGCAAGGCCTGGTGGTGCAGTACACTCCACTGCCTTCTTACCAAGTCCCTGTGGGCAGTGACT
CACAAAACGTGGTCCAGCCATCCTTCCAGCAGCCCATGCTGGTTCCTGCCAGCCAGTCTGTGCAAGGAGG
CCTCCCAACAGGAGGTGTGCCTGTGTACTACAGCATGATCCCACCAGCTCAGCAGAACGGAACGAGCCCT
TCTGTGGGCTTTCTGCAGCCTCCTGGCTCTGAGCAGTACCAGATGCCTCAGTCTCCCTCTCCCTGCAGCC
CACCACAGATGTCACAGCAGTACTCAGGAGTGTCACCTTCTGGACCAGGTGTGGTGGTCATGCAACTGAA
TGTCCCTAACGGACCCCAGGCCCCCCAGAATCCATCCATGGTCCAATGGAGTCACTGCAAATACTACAGC
GTGGAGCAGCGTGGTCAGAAGCCTGGAGACCTGTACAGCCCTGATGGGAGCCCCCAGGCCAACGCACAAA
TGGGCAGCAGCCCCGTCACATCTCCTACCCAGTCTCCAGCACCCTCTCCTGTCACGAGCCTCAGCAACGT
CTGCACTGGACTCAGCCCCCTGCCTGTCCTCACACCATTCCCCCGGCCTGGGGGTCCTGCACAGGGTGAC
GGGCGCTATTCCCTACTGGGTCAGCCATTACAGTACAATCTGTCCATCTGCCCTCCCTTGCTCCATGGCC
AGTCAACTTACACGGTGCACCAGGGACAGAGCGGATTGAAGCACGGAAACCGGGGCAAGAGACAAGCACT
GAAATCTGCCTCCACTGACCTGGGGACAGCAGATGTTGTGCTTGGAAGGGTGCTGGAGGTGACTGACCTC
CCTGAAGGAATCACCCGTACGGAGGCTGACAAACTCTTCACCCAGCTTGCCATGTCTGGTGCCAAGATCC
AGTGGCTTAAGGATGCTCAGGGGCTGCCTGGTGCAGGCGGGGGGGACAACAGTGGGACTGCTGAGAACGG
CCGCCACCCGGACCTCGCAGCCCTGTACACGATAGTGGCTGTGTTCCCCAGCCCCCTGGCCGCCCAGAAC
GCCTCCCTTCGCCTCAACAACTCTGTGAGTCGCTTCAAACTCCGAGTGGCTAAAAAGAACTACGACCTGA
GGATCCTGGAACGAGCTAGCTCTCAATAG

Translation (1012 aa):
MSNSNTTQETLEIMKESEKKLVEESVNKNKFISKTPSKEDVEKEGEENGLRQETQRRTSSHGHARKRAKS
NSKLKLVRSLAVCEESSTPFVDGPLDTQDIIQLHISCPSDKEEEKSTKDVSEKEDKDKSKEKVPRKMLSR
DSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQFKKFPQMTSYHRMLLHRVAAY
FGMDHNVDQTGKAVIINKTSSTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQTGQNGYLNDI
RLSKEAFSSSSHKRRQIFRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSDGSVRSMRPPVTKASSF
SGISILTRGDSIGSSKGGSAGRLSRPGMALGAPEVCNQVTSPQSVRGLLPCTAQQQQQQQQQQQQLPALP
PTPQHQPPLNNHMISQPVPALQPSPQPVQFSPSSCPQVLLPVSPPQQYNMAEDLSNPFGQMSLSRQGSTE
AADPSSALFQPPLISQHPQQASFIMASAGQPLPTSNYSTSSHAPPTQQVLPPQGYMQPPQQIQVSYYPPG
QYPNSNQQYRPLSHPVAYSPQRGQQLPQASQQPGLQPMMSNQQQTAYQGMLGVQQPQNQGLLSNQRSSMG
GQMQGLVVQYTPLPSYQVPVGSDSQNVVQPSFQQPMLVPASQSVQGGLPTGGVPVYYSMIPPAQQNGTSP
SVGFLQPPGSEQYQMPQSPSPCSPPQMSQQYSGVSPSGPGVVVMQLNVPNGPQAPQNPSMVQWSHCKYYS
VEQRGQKPGDLYSPDGSPQANAQMGSSPVTSPTQSPAPSPVTSLSNVCTGLSPLPVLTPFPRPGGPAQGD
GRYSLLGQPLQYNLSICPPLLHGQSTYTVHQGQSGLKHGNRGKRQALKSASTDLGTADVVLGRVLEVTDL
PEGITRTEADKLFTQLAMSGAKIQWLKDAQGLPGAGGGDNSGTAENGRHPDLAALYTIVAVFPSPLAAQN
ASLRLNNSVSRFKLRVAKKNYDLRILERASSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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