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Report for CCDS48324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48324.1 Public Mus musculus 1 Hdac4 23 108 98 CCDS HistoryNCBI Gene:208727Re-query CCDS DB by CCDS ID:48324.1Re-query CCDS DB by GeneID:208727See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008995.14 ENSMUSP00000008995.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008995.14Link to Ensembl Protein Viewer:ENSMUSP00000008995.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000008995Re-query CCDS DB by Protein ID:ENSMUSP00000008995
Original member Current member EBI ENSMUST00000097644.8 ENSMUSP00000095249.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097644.8Link to Ensembl Protein Viewer:ENSMUSP00000095249.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000097644Re-query CCDS DB by Protein ID:ENSMUSP00000095249
Original member Current member NCBI NM_207225.2 NP_997108.1 Accepted alive Link to Nucleotide Sequence:NM_207225.2Link to Protein Sequence:NP_997108.1Re-query CCDS DB by Nucleotide ID:NM_207225Re-query CCDS DB by Protein ID:NP_997108Link to BLAST:NP_997108.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997108.1 1076 Q6NZM9-1 1076 100% 0 0

Chromosomal Locations for CCDS 48324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 91933347 91933386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91933656 91933797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91934602 91934686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91945900 91946033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91947418 91947536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91955290 91955387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91956042 91956161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91958355 91958442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91959411 91959466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91961453 91961560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91964780 91964826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91968353 91968458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91970943 91971076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91972700 91972886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91975439 91975693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91982029 91982252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91984378 91984573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91984661 91984777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91987545 91987657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91991483 91991614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 91996057 91996178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92002155 92002275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92012669 92012819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92029955 92030196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92054901 92054972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 92148256 92148277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3231 nt):
ATGAGCTCCCAAAGCCATCCAGATGGACTTTCTGGCCGAGACCAGCCTGTGGAGCTGCTGAATCCTGCCC
GTGTGAACCACATGCCCAGCACGGTGGACGTGGCTACAGCGCTGCCTCTGCAAGTGGCCCCTACAGCAGT
ACCCATGGACCTGCGCTTGGACCACCAGTTCTCACTGCCCTTGGAACCTGCATTGCGGGAGCAGCAACTG
CAGCAGGAACTCCTAGCACTGAAACAGAAGCAGCAGATCCAGCGGCAGATACTCATTGCAGAGTTCCAGC
GTCAACATGAGCAGTTGTCCCGACAGCATGAGGCACAGTTGCATGAACATATCAAGCAGCAGCAGGAGAT
GCTGGCCATGAAGCACCAGCAGGAGCTGCTGGAGCACCAGCGGAAACTGGAGCGGCACCGGCAAGAGCAG
GAGCTGGAGAAGCAGCACCGTGAGCAGAAGCTGCAGCAGCTCAAGAACAAGGAGAAGGGCAAAGAGAGTG
CTGTGGCGAGCACAGAGGTGAAGATGAAGCTGCAGGAGTTTGTTCTCAACAAGAAGAAGGCTCTAGCCCA
CCGGAACCTGAACCACTGCATTTCCAGCGATCCCCGCTACTGGTATGGGAAGACACAGCACAGCTCCCTT
GACCAGAGCTCTCCACCCCAGAGTGGGGTGTCAGCCTCCTACAACCACCCCGTCTTGGGAATGTACGACG
CCAAAGATGACTTCCCTCTTAGGAAAACAGCTTCTGAACCTAACCTGAAATTACGCTCAAGGCTTAAGCA
GAAAGTAGCTGAGAGACGGAGCAGCCCCCTGTTGCGCAGGAAAGATGGCCCTGTGGCCACTGCTCTAAAA
AAGCGACCCCTGGATGTTACAGACTCCGCATGCAGCAGCGCCCCTGGCTCCGGTCCCAGCTCTCCAAATA
GCAGCTCTGGCAACGTCAGCACTGAGAATGGCATCGCACCCACTGTGCCCAGCGCTCCAGCTGAGACGAG
CTTGGCACACAGACTTGTGACTCGAGAAGGCTCAGTCGCCCCACTTCCTCTCTACACGTCACCATCCTTA
CCCAACATCACCTTGGGACTTCCTGCCACTGGCCCTGCCGCTGGTGCGGCAGGTCAGCAGGATGCTGAGA
GGCTTGCTCTCCCAGCTCTCCAGCAGCGGATCTTGTTCCCTGGGACCCACCTCACCCCGTACCTGAGCAC
CTCGCCCCTGGAGAGGGACGGTGCAGCAGCTCACAACCCCCTCCTGCAGCACATGGTCCTGCTGGAGCAG
CCACCCACCCAGACACCCCTTGTCACAGGCCTGGGGGCGCTGCCCCTCCACTCACAGTCCCTGGTTGGTG
CGGACAGGGTGTCCCCATCCATTCACAAGCTGCGGCAGCACCGCCCTCTGGGGCGCACGCAGTCAGCACC
CCTGCCGCAGAACGCACAGGCCCTGCAGCACCTGGTGATCCAGCAGCAGCACCAGCAGTTCCTGGAGAAG
CACAAGCAACAGTTCCAGCAGCAGCAGCTGCACCTCAGCAAGATAATCTCCAAACCTAGTGAGCCACCTC
GGCAGCCTGAGAGCCACCCAGAGGAGACAGAGGAGGAGCTCCGTGAGCACCAGGCCTTGCTGGATGAGCC
CTACCTAGATCGGCTACCTGGGCAGAAGGAGCCCTCCCTGGCTGGTGTGCAGGTGAAGCAGGAGCCCATT
GAGAGTGAGGAGGAAGAAGCGGAGGCCACTCGAGAGACAGAGCCCGGCCAGCGCCCAGCCACTGAGCAGG
AGCTGCTCTTCAGACAGCAAGCCCTCCTACTGGAGCAGCAGAGGATCCACCAGTTAAGAAACTACCAGGC
ATCTATGGAGGCTGCTGGCATCCCTGTGTCATTTGGCAGCCACAGACCTCTGTCTCGGGCACAGTCCTCC
CCAGCATCTGCCACCTTCCCCATGTCAGTCCAGGAGCCCCCCACCAAGCCAAGGTTCACCACAGGTCTTG
TGTATGACACACTGATGTTGAAGCATCAGTGCACCTGTGGGAACACCAACAGCCACCCGGAGCATGCTGG
GAGGATCCAGAGCATCTGGTCCCGCCTGCAGGAGACTGGACTCCGTGGCAAGTGTGAGTGCATCCGTGGA
CGCAAGGCCACATTGGAGGAGCTGCAGACAGTGCACTCGGAGGCCCACACACTCCTCTACGGCACAAATC
CTCTCAACAGACAGAAACTGGACAGCTCGCTGACCTCAGTGTTCGTCAGGCTTCCTTGTGGTGGTGTTGG
GGTGGATAGCGACACCATATGGAATGAGGTGCACTCGTCTGGGGCAGCCCGCCTGGCTGTAGGCTGTGTA
GTGGAGCTGGTCTTCAAGGTGGCCACGGGAGAGCTAAAGAATGGCTTTGCTGTGGTTCGTCCCCCAGGAC
ACCATGCCGAGGAGAGCACACCCATGGGTTTCTGCTACTTTAACTCCGTGGCAGTTGCAGCCAAACTTCT
CCAGCAGAGGCTGAATGTGAGCAAGATCCTCATTGTAGACTGGGATGTACATCATGGGAATGGGACCCAG
CAGGCCTTCTACAATGACCCCAATGTTCTCTACATGTCCCTGCACCGCTATGACGATGGGAACTTCTTCC
CAGGAAGTGGAGCACCAGATGAGGTGGGCACAGGGCCAGGCGTGGGTTTCAATGTCAACATGGCTTTCAC
GGGTGGCCTCGAACCCCCCATGGGAGACGCTGAGTACTTGGCAGCCTTCAGAACGGTGGTTATGCCTATC
GCAAATGAGTTTGCCCCAGATGTGGTACTGGTGTCATCGGGCTTCGATGCTGTGGAGGGCCACCCCACAC
CTCTTGGAGGGTACAATCTCTCTGCCAAATGTTTTGGGTACTTGACAAAACAGCTGATGGGCTTAGCTGG
TGGCCGGCTTGTGCTGGCCCTTGAGGGAGGCCATGACCTGACAGCCATCTGTGATGCTTCTGAAGCCTGC
GTGTCTGCTCTGCTGGGAAACGAGCTTGAGCCTCTGCCAGAAAAGGTTCTACATCAGAGACCCAATGCCA
ATGCTGTCCACTCCATGGAGAAAGTGATGGACATCCACAGCAAGTACTGGCGCTGCCTGCAGCGTCTGTC
CTCCACGGTGGGGCACTCTCTGATTGAGGCGCAAAAGTGTGAGAAGGAAGAAGCTGAGACAGTCACCGCC
ATGGCCTCGCTGTCTGTAGGCGTCAAACCTGCTGAGAAGAGATCTGAGGAGGAGCCCATGGAGGAGGAAC
CACCACTGTAG

Translation (1076 aa):
MSSQSHPDGLSGRDQPVELLNPARVNHMPSTVDVATALPLQVAPTAVPMDLRLDHQFSLPLEPALREQQL
QQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLERHRQEQ
ELEKQHREQKLQQLKNKEKGKESAVASTEVKMKLQEFVLNKKKALAHRNLNHCISSDPRYWYGKTQHSSL
DQSSPPQSGVSASYNHPVLGMYDAKDDFPLRKTASEPNLKLRSRLKQKVAERRSSPLLRRKDGPVATALK
KRPLDVTDSACSSAPGSGPSSPNSSSGNVSTENGIAPTVPSAPAETSLAHRLVTREGSVAPLPLYTSPSL
PNITLGLPATGPAAGAAGQQDAERLALPALQQRILFPGTHLTPYLSTSPLERDGAAAHNPLLQHMVLLEQ
PPTQTPLVTGLGALPLHSQSLVGADRVSPSIHKLRQHRPLGRTQSAPLPQNAQALQHLVIQQQHQQFLEK
HKQQFQQQQLHLSKIISKPSEPPRQPESHPEETEEELREHQALLDEPYLDRLPGQKEPSLAGVQVKQEPI
ESEEEEAEATRETEPGQRPATEQELLFRQQALLLEQQRIHQLRNYQASMEAAGIPVSFGSHRPLSRAQSS
PASATFPMSVQEPPTKPRFTTGLVYDTLMLKHQCTCGNTNSHPEHAGRIQSIWSRLQETGLRGKCECIRG
RKATLEELQTVHSEAHTLLYGTNPLNRQKLDSSLTSVFVRLPCGGVGVDSDTIWNEVHSSGAARLAVGCV
VELVFKVATGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRLNVSKILIVDWDVHHGNGTQ
QAFYNDPNVLYMSLHRYDDGNFFPGSGAPDEVGTGPGVGFNVNMAFTGGLEPPMGDAEYLAAFRTVVMPI
ANEFAPDVVLVSSGFDAVEGHPTPLGGYNLSAKCFGYLTKQLMGLAGGRLVLALEGGHDLTAICDASEAC
VSALLGNELEPLPEKVLHQRPNANAVHSMEKVMDIHSKYWRCLQRLSSTVGHSLIEAQKCEKEEAETVTA
MASLSVGVKPAEKRSEEEPMEEEPPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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