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Report for CCDS48282.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48282.1 Public Mus musculus 1 Akr1cl 23 108 98 CCDS HistoryNCBI Gene:70861Re-query CCDS DB by CCDS ID:48282.1Re-query CCDS DB by GeneID:70861See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48282.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069142.11 ENSMUSP00000063309.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069142.11Link to Ensembl Protein Viewer:ENSMUSP00000063309.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000069142Re-query CCDS DB by Protein ID:ENSMUSP00000063309
Original member Current member NCBI NM_027582.4 NP_081858.2 Accepted alive Link to Nucleotide Sequence:NM_027582.4Link to Protein Sequence:NP_081858.2Re-query CCDS DB by Nucleotide ID:NM_027582Re-query CCDS DB by Protein ID:NP_081858Link to BLAST:NP_081858.2

Chromosomal Locations for CCDS 48282.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 65013267 65013309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65014677 65014759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65016067 65016232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65016665 65016774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65021383 65021505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65021919 65021996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65024663 65024779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65025563 65025730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65030568 65030648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGAATCCCAAGCGCTACATGGAACTAAGTGATGGCCACCACATTCCTGTGCTTGGCTTTGGAACCTTTG
TCCCAGGAGAGGTTTCCAAGAGTATGGTTGCAAAAGCCACCAAAATAGCTATAGATGCTGGATTCCGCCA
TATTGACTCAGCTTATTTCTACCAAAATGAGGAGGAAGTAGGGCTGGCCATCCGAAGCAAGGTTGCTGAT
GGCACTGTGAGGAGAGAAGATATATTCTACACTTCAAAGCTTCCCTGCACATGTCATAGACCAGAGCTGG
TCCAGCCTTGCTTGGAACAATCCCTGAGAAAGCTTCAGCTGGATTATGTTGATCTGTACCTTATTCACTG
CCCAGTGTCCATGAAGCCAGGCAATGATCTTATTCCAACAGATGAAAATGGGAAATTATTATTTGACACA
GTGGATCTCTGTGACACATGGGAGGCCATGGAGAAGTGTAAGGATTCAGGGTTAGCCAAGTCCATTGGTG
TGTCCAACTTTAACCGGAGGCAGCTGGAGATGATCCTGAACAAGCCAGGGCTCAGGTACAAGCCTGTGTG
CAACCAGGTAGAGTGTCACCCTTATCTGAACCAGAGCAAGCTCCTGGACTACTGCAAGTCAAAAGACATC
GTTCTGGTTGCCTATGGTGCTCTTGGCAGCCAACGGTGTAAGAACTGGATAGAGGAGAATGCCCCATATC
TCTTGGAAGACCCAACTCTGTGTGCCATGGCGGAAAAGCACAAGCAAACTCCGGCCCTAATTTCCCTCCG
GTATCTGCTGCAGCGTGGGATTGTCATTGTCACCAAGAGTTTCAATGAGAAGCGGATCAAGGAGAACCTG
AAGGTCTTTGAGTTCCACTTGCCAGCAGAGGACATGGCAGTTATAGATAGGCTGAACAGAAACTACCGAT
ATGCTACTGCTCGTATTATTTCTGCTCACCCCAATTATCCATTTTTGGATGAATATTAA

Translation (322 aa):
MNPKRYMELSDGHHIPVLGFGTFVPGEVSKSMVAKATKIAIDAGFRHIDSAYFYQNEEEVGLAIRSKVAD
GTVRREDIFYTSKLPCTCHRPELVQPCLEQSLRKLQLDYVDLYLIHCPVSMKPGNDLIPTDENGKLLFDT
VDLCDTWEAMEKCKDSGLAKSIGVSNFNRRQLEMILNKPGLRYKPVCNQVECHPYLNQSKLLDYCKSKDI
VLVAYGALGSQRCKNWIEENAPYLLEDPTLCAMAEKHKQTPALISLRYLLQRGIVIVTKSFNEKRIKENL
KVFEFHLPAEDMAVIDRLNRNYRYATARIISAHPNYPFLDEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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