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Report for CCDS4826.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4826.1 Public Homo sapiens 6 PPIL1 24 110 108 CCDS HistoryNCBI Gene:51645Re-query CCDS DB by CCDS ID:4826.1Re-query CCDS DB by GeneID:51645See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4826.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373699.6 ENSP00000362803.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373699.6Link to Ensembl Protein Viewer:ENSP00000362803.5Re-query CCDS DB by Nucleotide ID:ENST00000373699Re-query CCDS DB by Protein ID:ENSP00000362803
Original member Current member NCBI NM_016059.5 NP_057143.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016059.5Link to Protein Sequence:NP_057143.1Re-query CCDS DB by Nucleotide ID:NM_016059Re-query CCDS DB by Protein ID:NP_057143Link to BLAST:NP_057143.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057143.1 166 Q9Y3C6 166 100% 0 0

Chromosomal Locations for CCDS 4826.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 36855813 36856033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36856586 36856654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36871718 36871872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36874717 36874772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGCGGCAATTCCCCCAGATTCCTGGCAGCCACCCAACGTTTACTTGGAGACCAGCATGGGAATCATTG
TGCTGGAGCTGTACTGGAAGCATGCTCCAAAGACCTGTAAGAACTTTGCTGAGTTGGCTCGTCGAGGTTA
CTACAATGGCACAAAATTCCACAGAATTATCAAAGACTTCATGATCCAAGGAGGTGACCCAACAGGGACA
GGTCGAGGTGGTGCATCTATCTATGGCAAACAGTTTGAAGATGAACTTCATCCAGACTTGAAATTCACGG
GGGCTGGAATTCTCGCAATGGCCAATGCGGGGCCAGATACCAATGGCAGCCAGTTCTTTGTGACCCTCGC
CCCCACCCAGTGGCTTGACGGCAAACACACCATTTTTGGCCGAGTGTGTCAGGGCATAGGAATGGTGAAT
CGCGTGGGAATGGTAGAAACAAACTCCCAGGACCGCCCTGTGGACGACGTGAAGATCATTAAGGCATACC
CTTCTGGGTAG

Translation (166 aa):
MAAIPPDSWQPPNVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGT
GRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVN
RVGMVETNSQDRPVDDVKIIKAYPSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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